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Tan0000671 (gene) of Snake gourd v1 genome

Gene IDTan0000671
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG04:73406454..73407477
RNA-Seq ExpressionTan0000671
SyntenyTan0000671
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]7.8e-2151.49Show/hide
Query:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVE-----------AHPFAKVLRNKSFPHFDELAIV
        SDNGTFRPGYLQHL+++L  K+P   L+ +TIECK+R +KKQY  + EMLS   SGF WN++ KCV+           +HP AK +  K FPH+D+L+ V
Subjt:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVE-----------AHPFAKVLRNKSFPHFDELAIV

Query:  F
        F
Subjt:  F

XP_038889264.1 uncharacterized protein At2g29880-like [Benincasa hispida]6.3e-2355.45Show/hide
Query:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVE-----------AHPFAKVLRNKSFPHFDELAIV
        +D  TF+PGYLQ LQ L   K+PS  +  STIECK+RF+K+QY  IVEMLS AC+GFGWN + KCV+           +HP  K LR+K FPH DEL+IV
Subjt:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVE-----------AHPFAKVLRNKSFPHFDELAIV

Query:  F
        F
Subjt:  F

XP_038895852.1 uncharacterized protein LOC120084021 [Benincasa hispida]3.7e-2357.78Show/hide
Query:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEAHPFAKVLRNKSFPHFDELAIVF
        SDNGTF+PGYLQHL+++L  K+    L+ +TIECK+R +KKQY  + EMLS   SGF WN++ KCV++HP AK + NKSFPH+D+L+ VF
Subjt:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEAHPFAKVLRNKSFPHFDELAIVF

XP_038896734.1 uncharacterized protein At2g29880-like [Benincasa hispida]5.9e-2153.47Show/hide
Query:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVE-----------AHPFAKVLRNKSFPHFDELAIV
        +DNGTF+PGY   LQ+LL  K+ S  +  STIECK+RF+K+QY  IVEMLS AC+ FGWN + KCVE           +HP AK LR+K  PH++EL+I+
Subjt:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVE-----------AHPFAKVLRNKSFPHFDELAIV

Query:  F
        F
Subjt:  F

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]5.9e-2151.49Show/hide
Query:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVE-----------AHPFAKVLRNKSFPHFDELAIV
        SDNGTFRPGYLQHL+++L  K+P   L+ +TIECK+R +KKQY  + EMLS   SGF WN++ KCV+           +HP AK + NK FPH+D+ + V
Subjt:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVE-----------AHPFAKVLRNKSFPHFDELAIV

Query:  F
        F
Subjt:  F

TrEMBL top hitse value%identityAlignment
A0A5A7TXU5 Retrotransposon protein7.8e-1948.48Show/hide
Query:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEA---------HPFAKVLRNKSFPHFDELAIVF
        SDNGTFRPGYL  L +++  K+P S +  STI+ +I+ MK+ +  + EM    CSGFGWN + KC+ A         HP AK L NKSF H+DEL+ VF
Subjt:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEA---------HPFAKVLRNKSFPHFDELAIVF

A0A5A7U2A6 Retrotransposon protein7.8e-1948.48Show/hide
Query:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEA---------HPFAKVLRNKSFPHFDELAIVF
        SDNGTFRPGYL  L +++  K+P S +  STI+ +I+ MK+ +  + EM    CSGFGWN + KC+ A         HP AK L NKSF H+DEL+ VF
Subjt:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEA---------HPFAKVLRNKSFPHFDELAIVF

A0A5A7UME4 Retrotransposon protein7.8e-1948.48Show/hide
Query:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEA---------HPFAKVLRNKSFPHFDELAIVF
        SDNGTFRPGYL  L +++  K+P S +  STI+ +I+ MK+ +  + EM    CSGFGWN + KC+ A         HP AK L NKSF H+DEL+ VF
Subjt:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEA---------HPFAKVLRNKSFPHFDELAIVF

A0A5D3CBF7 Retrotransposon protein7.8e-1948.48Show/hide
Query:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEA---------HPFAKVLRNKSFPHFDELAIVF
        SDNGTFRPGYL  L +++  K+P S +  STI+ +I+ MK+ +  + EM    CSGFGWN + KC+ A         HP AK L NKSF H+DEL+ VF
Subjt:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEA---------HPFAKVLRNKSFPHFDELAIVF

A0A5D3DPR5 Retrotransposon protein7.8e-1948.48Show/hide
Query:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEA---------HPFAKVLRNKSFPHFDELAIVF
        SDNGTFRPGYL  L +++  K+P S +  STI+ +I+ MK+ +  + EM    CSGFGWN + KC+ A         HP AK L NKSF H+DEL+ VF
Subjt:  SDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEA---------HPFAKVLRNKSFPHFDELAIVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACATTCGTCTGACAATGGAACATTCCGACCTGGATATTTGCAACATCTCCAGAAACTACTTGAAACGAAGCTTCCATCTTCTTTGTTGTCCACTAGTACAATTGA
ATGCAAAATAAGATTTATGAAGAAGCAATATGGAACCATTGTAGAGATGTTGAGTACTGCCTGTTCTGGATTTGGATGGAACAAGGACCTAAAATGCGTAGAAGCTCATC
CTTTCGCAAAGGTACTGCGAAACAAGTCATTCCCACACTTTGATGAATTGGCGATAGTATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAACATTCGTCTGACAATGGAACATTCCGACCTGGATATTTGCAACATCTCCAGAAACTACTTGAAACGAAGCTTCCATCTTCTTTGTTGTCCACTAGTACAATTGA
ATGCAAAATAAGATTTATGAAGAAGCAATATGGAACCATTGTAGAGATGTTGAGTACTGCCTGTTCTGGATTTGGATGGAACAAGGACCTAAAATGCGTAGAAGCTCATC
CTTTCGCAAAGGTACTGCGAAACAAGTCATTCCCACACTTTGATGAATTGGCGATAGTATTTTGA
Protein sequenceShow/hide protein sequence
MKHSSDNGTFRPGYLQHLQKLLETKLPSSLLSTSTIECKIRFMKKQYGTIVEMLSTACSGFGWNKDLKCVEAHPFAKVLRNKSFPHFDELAIVF