CuGenDBv2

Gene ID	Tan0000677
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Photosystem II PsbX
Genome location	LG08:468710..469081
RNA-Seq Expression	Tan0000677
Synteny	Tan0000677
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061475.1 membrane family protein [Cucumis melo var. makuwa]

2.4e-46

92.68

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMAMPITNAAQKRAR +EAFAKPLPLRPSNKP + +S SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

XP_008459641.1 PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo]

2.7e-45

91.06

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SM MPITNAAQKR R +EAFAKPLPLRPSNKP + +S SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

XP_011648590.1 uncharacterized protein LOC105434533 [Cucumis sativus]

2.0e-45

91.87

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMAMPITNAAQKRAR +EAFAKPLPLRPSNKP + +S SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

XP_022946746.1 uncharacterized protein LOC111450721 [Cucurbita moschata]

3.5e-45

91.06

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSAVSMAMPITNA QKRARS++AFAK LPLRPSNKP TA+S S  KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGA+IGV+NFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

XP_038890010.1 uncharacterized protein LOC120079733 [Benincasa hispida]

1.4e-46

93.5

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMAMPITNAAQKRAR +EAFAKPLPLRPSNKP  A+S SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIL7 Uncharacterized protein

9.8e-46

91.87

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMAMPITNAAQKRAR +EAFAKPLPLRPSNKP + +S SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

A0A1S3CAS0 uncharacterized protein LOC103498700

1.3e-45

91.06

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SM MPITNAAQKR R +EAFAKPLPLRPSNKP + +S SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

A0A5A7V6L0 Membrane family protein

1.2e-46

92.68

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMAMPITNAAQKRAR +EAFAKPLPLRPSNKP + +S SS KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

A0A6J1G4H3 uncharacterized protein LOC111450721

1.7e-45

91.06

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSAVSMAMPITNA QKRARS++AFAK LPLRPSNKP TA+S S  KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGA+IGV+NFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

6.4e-45

90.24

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSAVSMAMPITNA QKRARS++AFAK LPLRPSNKP TA+S S  KFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVV AILGA+IGV+NFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

1.0e-26

56.91

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Query:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+S+  P+          S  F KPLPL+PS K   A    + + QV+A   +KA+ G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+G
Subjt:  MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        G+V+T I+G V+GV+NFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

Sequences

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CDS sequence

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ATGGCTTCAACTTCTGCAGTTTCAATGGCGATGCCAATCACTAATGCGGCCCAGAAGAGAGCGAGGAGCTCTGAAGCCTTTGCTAAGCCATTGCCTTTGAGGCCTTCCAA
CAAGCCAACAACTGCTGCATCAAAATCCAGCGTCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCCGGACTCGCTGCAACTGCACTGACGGCCTCCATGG
TGCTTCCTGAGGTGGCTGAAGCTGCAGGGCCTGGAGTTAGTCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCTATCTTGGGTGCA
GTTATCGGCGTCGCCAATTTCGATCCCGTCAAGCGGACCTGA

mRNA sequence

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Protein sequence

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MASTSAVSMAMPITNAAQKRARSSEAFAKPLPLRPSNKPTTAASKSSVKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGA
VIGVANFDPVKRT

Tan0000677 (gene) of Snake gourd v1 genome