CuGenDBv2

Gene ID	Tan0000698
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG05:27974692..27975727
RNA-Seq Expression	Tan0000698
Synteny	Tan0000698
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0005488 - binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-107

62.76

Show/hide

Query:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL
        EDPLT+ +AM DVDKDEWIKAM+ E+ESMYFNSVW+LVDQPDGVKPIGCKWIYKRKRG DGKVQTFKARLVAKG+TQVEGV+YEETFSPV M+KSIRILL
Subjt:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL

Query:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV
        +IAAY+DYE            G+L              P  + K   L+RSIY  KQASRSWNIRFD AIKSYGFDQ +DEPCVYK+I++K+VA LVLYV
Subjt:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV

Query:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI
        DDILLIGN++  LTD+K+WLA+QFQMKDLGEA+          R++                              RHGV LSK+QCPKTPQDVE+MR I
Subjt:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI

Query:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        PYASAVGSLMYAMLCTRPDI    GI+     NP L H TA
Subjt:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-107

62.76

Show/hide

Query:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL
        EDPLT+ +AM DVDKDEWIKAM+ E+ESMYFNSVW+LVDQPDGVKPIGCKWIYKRKRG DGKVQTFKARLVAKG+TQVEGV+YEETFSPV M+KSIRILL
Subjt:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL

Query:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV
        +IAAY+DYE            G+L              P  + K   L+RSIY  KQASRSWNIRFD AIKSYGFDQ +DEPCVYK+I++K+VA LVLYV
Subjt:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV

Query:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI
        DDILLIGN++  LTD+K+WLA+QFQMKDLGEA+          R++                              RHGV LSK+QCPKTPQDVE+MR I
Subjt:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI

Query:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        PYASAVGSLMYAMLCTRPDI    GI+     NP L H TA
Subjt:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-107

62.76

Show/hide

Query:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL
        EDPLT+ +AM DVDKDEWIKAM+ E+ESMYFNSVW+LVDQPDGVKPIGCKWIYKRKRG DGKVQTFKARLVAKG+TQVEGV+YEETFSPV M+KSIRILL
Subjt:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL

Query:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV
        +IAAY+DYE            G+L              P  + K   L+RSIY  KQASRSWNIRFD AIKSYGFDQ +DEPCVYK+I++K+VA LVLYV
Subjt:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV

Query:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI
        DDILLIGN++  LTD+K+WLA+QFQMKDLGEA+          R++                              RHGV LSK+QCPKTPQDVE+MR I
Subjt:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI

Query:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        PYASAVGSLMYAMLCTRPDI    GI+     NP L H TA
Subjt:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-107

62.76

Show/hide

Query:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL
        EDPLT+ +AM DVDKDEWIKAM+ E+ESMYFNSVW+LVDQPDGVKPIGCKWIYKRKRG DGKVQTFKARLVAKG+TQVEGV+YEETFSPV M+KSIRILL
Subjt:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL

Query:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV
        +IAAY+DYE            G+L              P  + K   L+RSIY  KQASRSWNIRFD AIKSYGFDQ +DEPCVYK+I++K+VA LVLYV
Subjt:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV

Query:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI
        DDILLIGN++  LTD+K+WLA+QFQMKDLGEA+          R++                              RHGV LSK+QCPKTPQDVE+MR I
Subjt:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI

Query:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        PYASAVGSLMYAMLCTRPDI    GI+     NP L H TA
Subjt:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-107

62.76

Show/hide

Query:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL
        EDPLT+ +AM DVDKDEWIKAM+ E+ESMYFNSVW+LVDQPDGVKPIGCKWIYKRKRG DGKVQTFKARLVAKG+TQVEGV+YEETFSPV M+KSIRILL
Subjt:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL

Query:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV
        +IAAY+DYE            G+L              P  + K   L+RSIY  KQASRSWNIRFD AIKSYGFDQ +DEPCVYK+I++K+VA LVLYV
Subjt:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV

Query:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI
        DDILLIGN++  LTD+K+WLA+QFQMKDLGEA+          R++                              RHGV LSK+QCPKTPQDVE+MR I
Subjt:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI

Query:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        PYASAVGSLMYAMLCTRPDI    GI+     NP L H TA
Subjt:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.2e-107

62.76

Show/hide

Query:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL
        EDPLT+ +AM DVDKDEWIKAM+ E+ESMYFNSVW+LVDQPDGVKPIGCKWIYKRKRG DGKVQTFKARLVAKG+TQVEGV+YEETFSPV M+KSIRILL
Subjt:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL

Query:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV
        +IAAY+DYE            G+L              P  + K   L+RSIY  KQASRSWNIRFD AIKSYGFDQ +DEPCVYK+I++K+VA LVLYV
Subjt:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV

Query:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI
        DDILLIGN++  LTD+K+WLA+QFQMKDLGEA+          R++                              RHGV LSK+QCPKTPQDVE+MR I
Subjt:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI

Query:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        PYASAVGSLMYAMLCTRPDI    GI+     NP L H TA
Subjt:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

A0A5A7TWB9 Gag/pol protein

1.2e-107

62.76

Show/hide

Query:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL
        EDPLT+ +AM DVDKDEWIKAM+ E+ESMYFNSVW+LVDQPDGVKPIGCKWIYKRKRG DGKVQTFKARLVAKG+TQVEGV+YEETFSPV M+KSIRILL
Subjt:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL

Query:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV
        +IAAY+DYE            G+L              P  + K   L+RSIY  KQASRSWNIRFD AIKSYGFDQ +DEPCVYK+I++K+VA LVLYV
Subjt:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV

Query:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI
        DDILLIGN++  LTD+K+WLA+QFQMKDLGEA+          R++                              RHGV LSK+QCPKTPQDVE+MR I
Subjt:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI

Query:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        PYASAVGSLMYAMLCTRPDI    GI+     NP L H TA
Subjt:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

A0A5D3BHG7 Gag/pol protein

1.2e-107

62.76

Show/hide

Query:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL
        EDPLT+ +AM DVDKDEWIKAM+ E+ESMYFNSVW+LVDQPDGVKPIGCKWIYKRKRG DGKVQTFKARLVAKG+TQVEGV+YEETFSPV M+KSIRILL
Subjt:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL

Query:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV
        +IAAY+DYE            G+L              P  + K   L+RSIY  KQASRSWNIRFD AIKSYGFDQ +DEPCVYK+I++K+VA LVLYV
Subjt:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV

Query:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI
        DDILLIGN++  LTD+K+WLA+QFQMKDLGEA+          R++                              RHGV LSK+QCPKTPQDVE+MR I
Subjt:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI

Query:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        PYASAVGSLMYAMLCTRPDI    GI+     NP L H TA
Subjt:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

A0A5D3CPJ6 Gag/pol protein

1.2e-107

62.76

Show/hide

Query:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL
        EDPLT+ +AM DVDKDEWIKAM+ E+ESMYFNSVW+LVDQPDGVKPIGCKWIYKRKRG DGKVQTFKARLVAKG+TQVEGV+YEETFSPV M+KSIRILL
Subjt:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL

Query:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV
        +IAAY+DYE            G+L              P  + K   L+RSIY  KQASRSWNIRFD AIKSYGFDQ +DEPCVYK+I++K+VA LVLYV
Subjt:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV

Query:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI
        DDILLIGN++  LTD+K+WLA+QFQMKDLGEA+          R++                              RHGV LSK+QCPKTPQDVE+MR I
Subjt:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI

Query:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        PYASAVGSLMYAMLCTRPDI    GI+     NP L H TA
Subjt:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

A0A5D3CSZ6 Gag/pol protein

1.2e-107

62.76

Show/hide

Query:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL
        EDPLT+ +AM DVDKDEWIKAM+ E+ESMYFNSVW+LVDQPDGVKPIGCKWIYKRKRG DGKVQTFKARLVAKG+TQVEGV+YEETFSPV M+KSIRILL
Subjt:  EDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILL

Query:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV
        +IAAY+DYE            G+L              P  + K   L+RSIY  KQASRSWNIRFD AIKSYGFDQ +DEPCVYK+I++K+VA LVLYV
Subjt:  TIAAYYDYE------------GSL--------------PKAKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYV

Query:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI
        DDILLIGN++  LTD+K+WLA+QFQMKDLGEA+          R++                              RHGV LSK+QCPKTPQDVE+MR I
Subjt:  DDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRS------------------------------RHGVHLSKDQCPKTPQDVEDMRRI

Query:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        PYASAVGSLMYAMLCTRPDI    GI+     NP L H TA
Subjt:  PYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.0e-26

25.77

Show/hide

Query:  MISEDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIR
        + ++ P ++D      DK  W +A++ E+ +   N+ W +  +P+    +  +W++  K    G    +KARLVA+GFTQ   ++YEETF+PV  + S R
Subjt:  MISEDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIR

Query:  ILLTIAAYYDYE------------GSLPKAKSKRF------------ALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVY---KKIVDKTVAVL
         +L++   Y+ +            G+L +    R              L+++IY  KQA+R W   F++A+K   F  +  + C+Y   K  +++ + VL
Subjt:  ILLTIAAYYDYE------------GSLPKAKSKRF------------ALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVY---KKIVDKTVAVL

Query:  VLYVDDILLIGNEVEFLTDVKKWLASQFQMKDLGEARRRSRHGVHLSKDQ----------------------CPKTP---------QDVEDMRRIPYASA
         LYVDD+++   ++  + + K++L  +F+M DL E +      + + +D+                         TP          + ++    P  S 
Subjt:  VLYVDDILLIGNEVEFLTDVKKWLASQFQMKDLGEARRRSRHGVHLSKDQ----------------------CPKTP---------QDVEDMRRIPYASA

Query:  VGSLMYAMLCTRPDIIMQRGIIGDIS
        +G LMY MLCTRPD+     I+   S
Subjt:  VGSLMYAMLCTRPDIIMQRGIIGDIS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-47

34.2

Show/hide

Query:  MMISED--PLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVK
        ++IS+D  P +    +   +K++ +KAM  EMES+  N  ++LV+ P G +P+ CKW++K K+  D K+  +KARLV KGF Q +G++++E FSPVV + 
Subjt:  MMISED--PLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVK

Query:  SIRILLTIAAYYDYE------------GSLPK--------------AKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVY-KKIVDKTV
        SIR +L++AA  D E            G L +               K     L++S+Y  KQA R W ++FD  +KS  + +   +PCVY K+  +   
Subjt:  SIRILLTIAAYYDYE------------GSLPK--------------AKSKRFALHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVY-KKIVDKTV

Query:  AVLVLYVDDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRSRH------------------------------GVHLSKDQCPKTPQD
         +L+LYVDD+L++G +   +  +K  L+  F MKDLG A+          R SR                                + LSK  CP T ++
Subjt:  AVLVLYVDDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR----------RRSRH------------------------------GVHLSKDQCPKTPQD

Query:  VEDMRRIPYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDH
          +M ++PY+SAVGSLMYAM+CTRPDI    G++     NP  +H
Subjt:  VEDMRRIPYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDH

P92520 Uncharacterized mitochondrial protein AtMg00820

6.1e-16

45.35

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Query:  WIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILLTIA
        W +AM  E++++  N  W LV  P     +GCKW++K K   DG +   KARLVAKGF Q EG+ + ET+SPVV   +IR +L +A
Subjt:  WIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILLTIA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.6e-24

30.89

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Query:  RAMVDVDKDE-WIKAMDREMESMYFNSVWELVDQPDG-VKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILLTIAAY
        R  +   KDE W  AM  E+ +   N  W+LV  P   V  +GC+WI+ +K   DG +  +KARLVAKG+ Q  G++Y ETFSPV+   SIRI+L +A  
Subjt:  RAMVDVDKDE-WIKAMDREMESMYFNSVWELVDQPDG-VKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILLTIAAY

Query:  YDY-------------------------EGSLPKAKSKRFA-LHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYVDDILL
          +                          G + K +      L +++Y  KQA R+W +     + + GF  ++ +  ++     K++  +++YVDDIL+
Subjt:  YDY-------------------------EGSLPKAKSKRFA-LHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYVDDILL

Query:  IGNEVEFLTDVKKWLASQFQMKD-------LGEARRRSRHGVHLSK
         GN+   L +    L+ +F +KD       LG   +R   G+HLS+
Subjt:  IGNEVEFLTDVKKWLASQFQMKD-------LGEARRRSRHGVHLSK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.9e-25

28.95

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Query:  SEDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELV-DQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRI
        + +P T  +AM D   D W +AM  E+ +   N  W+LV   P  V  +GC+WI+ +K   DG +  +KARLVAKG+ Q  G++Y ETFSPV+   SIRI
Subjt:  SEDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELV-DQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRI

Query:  LLTIAAYYDY------------EGSLP----KAKSKRFA----------LHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVL
        +L +A    +            +G+L      ++   F           L ++IY  KQA R+W +     + + GF  ++ +  ++     +++  +++
Subjt:  LLTIAAYYDY------------EGSLP----KAKSKRFA----------LHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVL

Query:  YVDDILLIGNEVEFLTDVKKWLASQFQMKD-------LGEARRRSRHGVHLSK-----DQCPKTPQDVEDMRRIPYASAVGSLMYAMLCTRPDIIMQRGI
        YVDDIL+ GN+   L      L+ +F +K+       LG   +R   G+HLS+     D   +T          P A++    +++     PD    RGI
Subjt:  YVDDILLIGNEVEFLTDVKKWLASQFQMKD-------LGEARRRSRHGVHLSK-----DQCPKTPQDVEDMRRIPYASAVGSLMYAMLCTRPDIIMQRGI

Query:  IGDI
        +G +
Subjt:  IGDI

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

5.1e-34

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Query:  SEDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRIL
        +++P TY+ A   +    W  AMD E+ +M     WE+   P   KPIGCKW+YK K   DG ++ +KARLVAKG+TQ EG+++ ETFSPV  + S++++
Subjt:  SEDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRIL

Query:  LTIAAYYDYE--------------------GSLPKAKSKRFA----------LHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAV
        L I+A Y++                       LP   + R            L +SIY  KQASR W ++F   +  +GF Q+  +   + KI       
Subjt:  LTIAAYYDYE--------------------GSLPKAKSKRFA----------LHRSIYN-KQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAV

Query:  LVLYVDDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR-------RRSRHGVHLSK------------------DQCPKTPQ---------DVEDMRRIP
        +++YVDDI++  N    + ++K  L S F+++DLG  +        RS  G+++ +                     P  P          D  D +   
Subjt:  LVLYVDDILLIGNEVEFLTDVKKWLASQFQMKDLGEAR-------RRSRHGVHLSK------------------DQCPKTPQ---------DVEDMRRIP

Query:  YASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA
        Y   +G LMY  + TR DI      +   S  PRL H+ A
Subjt:  YASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

4.3e-17

45.35

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Query:  WIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILLTIA
        W +AM  E++++  N  W LV  P     +GCKW++K K   DG +   KARLVAKGF Q EG+ + ET+SPVV   +IR +L +A
Subjt:  WIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILLTIA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATGATCAGTGAGGATCCATTGACCTATGATCGAGCAATGGTTGATGTTGACAAAGACGAATGGATTAAAGCTATGGACCGGGAAATGGAGTCTATGTACTTCAATTC
TGTATGGGAGCTTGTGGATCAACCGGATGGGGTAAAACCTATTGGTTGCAAATGGATCTACAAGCGTAAACGTGGCGTAGATGGGAAAGTGCAGACCTTCAAAGCCCGAC
TAGTGGCAAAGGGTTTTACCCAGGTTGAAGGGGTTAACTATGAGGAGACCTTTTCACCTGTTGTCATGGTAAAGTCGATCAGGATCCTTCTGACCATTGCCGCGTATTAT
GACTACGAGGGTTCATTGCCCAAGGCCAAGAGCAAAAGGTTTGCGCTTCATAGGTCCATTTATAATAAACAAGCTTCGAGGTCTTGGAATATAAGGTTTGATGAGGCGAT
CAAATCTTATGGTTTTGATCAAAATCTCGACGAGCCTTGTGTCTATAAGAAAATCGTTGACAAAACTGTCGCAGTTTTGGTGTTGTATGTGGACGATATTCTTCTCATTG
GGAATGAAGTAGAATTTCTTACTGACGTTAAGAAGTGGCTAGCTTCGCAATTCCAAATGAAAGATTTAGGAGAAGCTCGAAGACGTTCTAGGCATGGGGTTCACTTGTCT
AAGGATCAGTGTCCTAAGACTCCTCAAGATGTTGAGGATATGAGACGGATTCCATATGCTTCGGCTGTAGGGAGCCTGATGTATGCCATGTTGTGTACTAGGCCCGACAT
CATTATGCAAAGAGGAATCATCGGAGATATATCACCCAATCCGAGATTAGATCACCGGACGGCGTAA

mRNA sequence

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Protein sequence

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MMISEDPLTYDRAMVDVDKDEWIKAMDREMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGKVQTFKARLVAKGFTQVEGVNYEETFSPVVMVKSIRILLTIAAYY
DYEGSLPKAKSKRFALHRSIYNKQASRSWNIRFDEAIKSYGFDQNLDEPCVYKKIVDKTVAVLVLYVDDILLIGNEVEFLTDVKKWLASQFQMKDLGEARRRSRHGVHLS
KDQCPKTPQDVEDMRRIPYASAVGSLMYAMLCTRPDIIMQRGIIGDISPNPRLDHRTA

Tan0000698 (gene) of Snake gourd v1 genome