CuGenDBv2

Gene ID	Tan0000701
Organism	Trichosanthes anguina (Snake gourd v1)
Description	E3 ubiquitin-protein ligase RNF34
Genome location	LG01:24260490..24262815
RNA-Seq Expression	Tan0000701
Synteny	Tan0000701
Gene Ontology terms	GO:0000492 - box C/D snoRNP assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domains	IPR027921 - NOP protein chaperone 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]

1.8e-78

86.27

Show/hide

Query:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM
        MRHASKDLLHLERK+LS+SSLESSLLVCKK+STSKE CRNEKPITEPA KS VLGRVQDFLGVISEANKKLQ+D+K+NA+KYDIEALDGNESEVI+LDLM
Subjt:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKI
        LGIADLHTPEAVAAAESAIIGN PVIPLTC  SSSESESEESSDDS+TSD++N+DNEKSDDQNTD  NRLSVK KRSNSR+ S RS+SKGK KSKKRPKI
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKI

Query:  LELS
          LS
Subjt:  LELS

XP_022936657.1 uncharacterized protein LOC111443185 isoform X1 [Cucurbita moschata]

2.0e-77

85.85

Show/hide

Query:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM
        MRHASKDLL LERK+L SSS ESSLLVCKK+STSKE CRNEKPITEPAPKSQVLGRV+DFLGV+SEANKKLQLDAKD+AEKYDIEAL+G+ESEVIELDLM
Subjt:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSS-ESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPK
        LGIADLHTPEAVAAAESAIIGNQPVI L CS+SSS ESESEESSDDS+TSDNN+DDNEKSD+QNTD GNRLSVK KR  SR+ + RSESK K KS KRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSS-ESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPK

Query:  ILELS
        ILELS
Subjt:  ILELS

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]

3.6e-79

86.89

Show/hide

Query:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM
        MRHASKDLL LERK+L SSSLESSLLVCKK+STSKE CRNEKPITEPAPKSQVLGRV+DFLGV+SEANKKLQLDAKD+AEKYDIEAL+GNESEVIELDLM
Subjt:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC--STSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRP
        LGIADLHTPEAVAAAESAIIGNQPVIPL C  S+SSSESESEESSDDS+TSDNN++DNEKSD QNTD GNRLSVK KRS SRR + RSES+ K KS KRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC--STSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRP

Query:  KILELS
        KILELS
Subjt:  KILELS

XP_023539679.1 uncharacterized protein LOC111800292 isoform X1 [Cucurbita pepo subsp. pepo]

3.6e-79

85.92

Show/hide

Query:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM
        MRHASKDLL LERK+L SSSLESSLLVCKK+STSKE CRNEKPITEPAPKSQVLGRV+DFLGV+SEANKKLQLDAKD+AEKYDIEAL+G+ESEVIELDLM
Subjt:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC--STSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRP
        LGIADLHTPEAVAAAESAIIGNQPVIPL C  S+SSSESESEE+SDDS+TSDNN+DDNEKSD++NTD GNRLSVK KRS SR+ + RSESK K KSKKRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC--STSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRP

Query:  KILELS
        +ILELS
Subjt:  KILELS

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]

7.9e-79

88.24

Show/hide

Query:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM
        MRH SKDLL+LERK+LSSSSLESSLLVCKK+STSKE  RNEKPITEPA KS VLGRV+DFLGVISEANKKLQ+DAKDNAEKYDIEALDGNES+VIELDLM
Subjt:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKI
        LGIADLHTPEAVAAAESAIIGNQPVIPLTCS SSSESESEESSDDS+TS++NNDDNEKSDDQNTDH NR SVK KRSNSR+ S RS+SKGK KS+KRPKI
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKI

Query:  LELS
        LELS
Subjt:  LELS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L448 Uncharacterized protein

1.2e-75

84.31

Show/hide

Query:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM
        MRH SKDLL+LERK+LSSSSLESSLLVCKK+STSK+  RNEKPITEPA KS VLGRV+DFLGVISEANKKLQ+D+K+NAEKYDIEALDGNESEVI+LDLM
Subjt:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKI
        LGIADLHTPEAV AAESAIIGN PVIPLTC  SSSESESEESSDDS+TSD++NDDNEKSDDQ TD  NRLSVK KRSNSR+ S RS+SKGK KSKKRPKI
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKI

Query:  LELS
          LS
Subjt:  LELS

A0A1S3BJW4 uncharacterized protein LOC103490838

8.6e-79

86.27

Show/hide

Query:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM
        MRHASKDLLHLERK+LS+SSLESSLLVCKK+STSKE CRNEKPITEPA KS VLGRVQDFLGVISEANKKLQ+D+K+NA+KYDIEALDGNESEVI+LDLM
Subjt:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKI
        LGIADLHTPEAVAAAESAIIGN PVIPLTC  SSSESESEESSDDS+TSD++N+DNEKSDDQNTD  NRLSVK KRSNSR+ S RS+SKGK KSKKRPKI
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKI

Query:  LELS
          LS
Subjt:  LELS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF34

8.6e-79

86.27

Show/hide

Query:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM
        MRHASKDLLHLERK+LS+SSLESSLLVCKK+STSKE CRNEKPITEPA KS VLGRVQDFLGVISEANKKLQ+D+K+NA+KYDIEALDGNESEVI+LDLM
Subjt:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKI
        LGIADLHTPEAVAAAESAIIGN PVIPLTC  SSSESESEESSDDS+TSD++N+DNEKSDDQNTD  NRLSVK KRSNSR+ S RS+SKGK KSKKRPKI
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKI

Query:  LELS
          LS
Subjt:  LELS

A0A6J1F913 uncharacterized protein LOC111443185 isoform X1

9.5e-78

85.85

Show/hide

Query:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM
        MRHASKDLL LERK+L SSS ESSLLVCKK+STSKE CRNEKPITEPAPKSQVLGRV+DFLGV+SEANKKLQLDAKD+AEKYDIEAL+G+ESEVIELDLM
Subjt:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSS-ESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPK
        LGIADLHTPEAVAAAESAIIGNQPVI L CS+SSS ESESEESSDDS+TSDNN+DDNEKSD+QNTD GNRLSVK KR  SR+ + RSESK K KS KRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSS-ESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPK

Query:  ILELS
        ILELS
Subjt:  ILELS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X1

1.7e-79

86.89

Show/hide

Query:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM
        MRHASKDLL LERK+L SSSLESSLLVCKK+STSKE CRNEKPITEPAPKSQVLGRV+DFLGV+SEANKKLQLDAKD+AEKYDIEAL+GNESEVIELDLM
Subjt:  MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC--STSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRP
        LGIADLHTPEAVAAAESAIIGNQPVIPL C  S+SSSESESEESSDDS+TSDNN++DNEKSD QNTD GNRLSVK KRS SRR + RSES+ K KS KRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC--STSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRP

Query:  KILELS
        KILELS
Subjt:  KILELS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71430.1 unknown protein

2.2e-26

51.68

Show/hide

Query:  KDLLHLERKNLSSSS-LESSLLVC---KKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLML
        KDLL LE KN SSSS ++S+LL+C    K     E     KP   P PKSQ+LG+++ FLGV++EANKK    ++ N E Y+IEAL GNESE+IE+DLML
Subjt:  KDLLHLERKNLSSSS-LESSLLVC---KKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLML

Query:  GIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSD
        G+ADL+TPEAV+AAE+AI G  P      S+S  ES+SE   ++S +++
Subjt:  GIADLHTPEAVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGGCATGCTAGCAAGGATCTTTTGCATTTGGAGCGGAAGAATTTGTCCTCTTCGTCTTTAGAGTCTTCACTGCTAGTTTGTAAAAAGAGCTCAACGTCCAAGGAGCT
CTGTCGGAATGAAAAACCCATTACAGAACCAGCTCCAAAAAGCCAAGTATTGGGAAGAGTCCAAGACTTCTTAGGAGTAATATCAGAAGCTAACAAAAAGCTGCAACTGG
ATGCAAAGGACAATGCTGAAAAATATGATATTGAAGCCCTCGATGGCAATGAATCAGAAGTCATTGAATTGGACCTGATGTTGGGTATTGCCGATCTTCATACTCCTGAA
GCTGTGGCTGCAGCTGAATCAGCAATAATTGGTAATCAGCCTGTGATTCCATTGACTTGTAGTACTAGTAGTAGTGAATCAGAGTCTGAAGAGAGTAGTGATGATAGTGT
TACAAGTGACAACAATAACGATGACAATGAAAAGAGTGACGATCAGAATACTGATCATGGTAACAGACTGTCAGTTAAATTCAAAAGATCAAACTCTAGAAGAATCAGTC
GTAGAAGTGAAAGCAAAGGAAAAGATAAATCAAAAAAGCGACCGAAGATTCTAGAGCTTTCTTAA

mRNA sequence

Show/hide mRNA sequence

CCAATTCCTCTGCTCTATTGAAGCCCATTGCCGGTCAGCAAACCAGTTTATCGGCGGCGCCTCCTCAGCTCTCCTTTTCGCCGGAAAGAGCTTCTGGCCGCCGCTAGCAG
TCGCCGTTGGGCCTTTGCAGTTTGCCATCTAGAAGGCGCGAAAGATGCGGCATGCTAGCAAGGATCTTTTGCATTTGGAGCGGAAGAATTTGTCCTCTTCGTCTTTAGAG
TCTTCACTGCTAGTTTGTAAAAAGAGCTCAACGTCCAAGGAGCTCTGTCGGAATGAAAAACCCATTACAGAACCAGCTCCAAAAAGCCAAGTATTGGGAAGAGTCCAAGA
CTTCTTAGGAGTAATATCAGAAGCTAACAAAAAGCTGCAACTGGATGCAAAGGACAATGCTGAAAAATATGATATTGAAGCCCTCGATGGCAATGAATCAGAAGTCATTG
AATTGGACCTGATGTTGGGTATTGCCGATCTTCATACTCCTGAAGCTGTGGCTGCAGCTGAATCAGCAATAATTGGTAATCAGCCTGTGATTCCATTGACTTGTAGTACT
AGTAGTAGTGAATCAGAGTCTGAAGAGAGTAGTGATGATAGTGTTACAAGTGACAACAATAACGATGACAATGAAAAGAGTGACGATCAGAATACTGATCATGGTAACAG
ACTGTCAGTTAAATTCAAAAGATCAAACTCTAGAAGAATCAGTCGTAGAAGTGAAAGCAAAGGAAAAGATAAATCAAAAAAGCGACCGAAGATTCTAGAGCTTTCTTAAG
AGCCATCTTTTGATTGCATCTGATTCCTCAATATGGATGCATCGTTATGGTTTGAAAGTATATGAAGCTTCTGATGCTTGGCACTGACAAAATCTCCAAGGTTAATTGCC
GGCCTAGTTCTTTGAGCTTGGGTAGGAAGCGATTTTGCTCAACCTTGTAATTTCAAGTTATTTCTTTCTTCACCTTTGTCTTGAGTTCAAGTGCTTTTGCTTGTGAAAGG
GGTGTCCTGTCTTCTTGCATTTCTATTTAGGAATTGGAATATGATTAAGTTGGAATTATTCTTGGTCAGATTGCCAAGGTTGGTTTGTATACTTGATATCAAACTTCGTT
ATTTCAGTAATAGCCAAAATTAAGAGATTTTTGTTC

Protein sequence

Show/hide protein sequence

MRHASKDLLHLERKNLSSSSLESSLLVCKKSSTSKELCRNEKPITEPAPKSQVLGRVQDFLGVISEANKKLQLDAKDNAEKYDIEALDGNESEVIELDLMLGIADLHTPE
AVAAAESAIIGNQPVIPLTCSTSSSESESEESSDDSVTSDNNNDDNEKSDDQNTDHGNRLSVKFKRSNSRRISRRSESKGKDKSKKRPKILELS

Tan0000701 (gene) of Snake gourd v1 genome