CuGenDBv2

Gene ID	Tan0000740
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG04:52528708..52529277
RNA-Seq Expression	Tan0000740
Synteny	Tan0000740
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-66

66.67

Show/hide

Query:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN
        M+S+ + +L +++L   NY +WK+ +NT+L++DDLRFVL EECPQVPA NA ++V++ Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM S Q 
Subjt:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN

Query:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL
        MFGQ S +++H++LKY+YN+ M EG+SVREHVL++MV FNVAEMNGAVIDE SQV FIL+SLP+SFLQFRSNAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-66

66.67

Show/hide

Query:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN
        M+S+ + +L +++L   NY +WK+ +NT+L++DDLRFVL EECPQVPA NA ++V++ Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM S Q 
Subjt:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN

Query:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL
        MFGQ S +++H++LKY+YN+ M EG+SVREHVL++MV FNVAEMNGAVIDE SQV FIL+SLP+SFLQFRSNAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-66

66.67

Show/hide

Query:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN
        M+S+ + +L +++L   NY +WK+ +NT+L++DDLRFVL EECPQVPA NA ++V++ Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM S Q 
Subjt:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN

Query:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL
        MFGQ S +++H++LKY+YN+ M EG+SVREHVL++MV FNVAEMNGAVIDE SQV FIL+SLP+SFLQFRSNAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

6.5e-67

67.2

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Query:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN
        M+S+ + +L +++L   NY  WK+ +NT+L++DDLRFVL EECPQVPA NA Q+V++ Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM S Q 
Subjt:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN

Query:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL
        MFGQ S +++H++LKY+YN+ M EG+SVREHVL++MV FNVAEMNGAVIDE SQV FIL+SLP+SFLQFRSNAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-66

66.67

Show/hide

Query:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN
        M+S+ + +L +++L   NY +WK+ +NT+L++DDLRFVL EECPQVPA NA ++V++ Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM S Q 
Subjt:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN

Query:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL
        MFGQ S +++H++LKY+YN+ M EG+SVREHVL++MV FNVAEMNGAVIDE SQV FIL+SLP+SFLQFRSNAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

7.0e-67

66.67

Show/hide

Query:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN
        M+S+ + +L +++L   NY +WK+ +NT+L++DDLRFVL EECPQVPA NA ++V++ Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM S Q 
Subjt:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN

Query:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL
        MFGQ S +++H++LKY+YN+ M EG+SVREHVL++MV FNVAEMNGAVIDE SQV FIL+SLP+SFLQFRSNAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

A0A5A7TU93 Gag/pol protein

7.0e-67

66.67

Show/hide

Query:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN
        M+S+ + +L +++L   NY +WK+ +NT+L++DDLRFVL EECPQVPA NA ++V++ Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM S Q 
Subjt:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN

Query:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL
        MFGQ S +++H++LKY+YN+ M EG+SVREHVL++MV FNVAEMNGAVIDE SQV FIL+SLP+SFLQFRSNAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

A0A5A7TWB9 Gag/pol protein

7.0e-67

66.67

Show/hide

Query:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN
        M+S+ + +L +++L   NY +WK+ +NT+L++DDLRFVL EECPQVPA NA ++V++ Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM S Q 
Subjt:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN

Query:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL
        MFGQ S +++H++LKY+YN+ M EG+SVREHVL++MV FNVAEMNGAVIDE SQV FIL+SLP+SFLQFRSNAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

A0A5A7V6N0 Gag/pol protein

3.1e-67

67.2

Show/hide

Query:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN
        M+S+ + +L +++L   NY  WK+ +NT+L++DDLRFVL EECPQVPA NA Q+V++ Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM S Q 
Subjt:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN

Query:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL
        MFGQ S +++H++LKY+YN+ M EG+SVREHVL++MV FNVAEMNGAVIDE SQV FIL+SLP+SFLQFRSNAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

A0A5D3CPJ6 Gag/pol protein

7.0e-67

66.67

Show/hide

Query:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN
        M+S+ + +L +++L   NY +WK+ +NT+L++DDLRFVL EECPQVPA NA ++V++ Y+RW KAN+KA+ YILAS+SEVL KKHE M++AREIM S Q 
Subjt:  MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQN

Query:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL
        MFGQ S +++H++LKY+YN+ M EG+SVREHVL++MV FNVAEMNGAVIDE SQV FIL+SLP+SFLQFRSNAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRKLRHESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGTCCTCAATTATAGCCTTACTCAAAAGTGAACGTTTAACTGACGAAAACTATACTACGTGGAAGTCCAACCTGAATACGATTCTTGTTGTTGACGACCTTCGGTT
TGTACTGACTGAGGAATGTCCTCAGGTCCCTGCTCGAAACGCTCCTCAATCTGTTAAGGATGCGTACGACCGTTGGATCAAGGCCAATGATAAGGCTAAGGTCTACATTT
TGGCTAGTGTTTCTGAAGTTCTGACCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGTTTCAAAACATGTTTGGACAACCGTCTAGAAAACTTCGG
CACGAATCCCTCAAGTACGTTTATAACTCATGTATGAAGGAGGGGTCGTCGGTGAGAGAACACGTTCTCGATCTGATGGTCCCCTTCAACGTGGCTGAAATGAATGGCGC
GGTCATAGACGAGCAAAGTCAGGTCTTGTTCATCCTGAAATCTCTTCCGAAAAGTTTCCTGCAATTCCGCAGCAATGCGGTGATGAACAAGATAGAGTACAACCTGACTA
CTCTCCTCAATGAACTGTAG

mRNA sequence

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Protein sequence

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MSSSIIALLKSERLTDENYTTWKSNLNTILVVDDLRFVLTEECPQVPARNAPQSVKDAYDRWIKANDKAKVYILASVSEVLTKKHEGMVSAREIMSSFQNMFGQPSRKLR
HESLKYVYNSCMKEGSSVREHVLDLMVPFNVAEMNGAVIDEQSQVLFILKSLPKSFLQFRSNAVMNKIEYNLTTLLNEL

Tan0000740 (gene) of Snake gourd v1 genome