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Tan0000788 (gene) of Snake gourd v1 genome

Gene IDTan0000788
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG07:72195309..72195920
RNA-Seq ExpressionTan0000788
SyntenyTan0000788
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021737847.1 uncharacterized protein LOC110704374 [Chenopodium quinoa]1.1e-1329.06Show/hide
Query:  MMWSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTF
        +MW +W RRN++ F  K +    ++    ++           +  + ++   S KGWKA     +KLN DA+  D+   G +G I RDW+ + +      
Subjt:  MMWSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTF

Query:  VDRSWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGVSL
        V   WS  + E K V   +     L  + V   I+ESDS  +I+ L + S+ F ++   +D+ +      +  ++C V R+ N  AHNLA LT   GV  
Subjt:  VDRSWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGVSL

Query:  VWK
        VW+
Subjt:  VWK

XP_021771836.1 uncharacterized protein LOC110735975 [Chenopodium quinoa]6.3e-1229.38Show/hide
Query:  MMWSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTF
        +MW++W RRN++ F  K V     +    ++          ++  + ++   S K WKAP    +KLN DA+  D    G +G I RDW+ + +      
Subjt:  MMWSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTF

Query:  VDRSWSIKVLEAKVVVEGLSQLFTLWKE-SVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALT
        V   W   + E K +   +     L K   +  +I+ESDS  +I+ LN+ S+ F ++   +D+ I      N  ++C V ++ N AAHNLA LT
Subjt:  VDRSWSIKVLEAKVVVEGLSQLFTLWKE-SVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALT

XP_021774608.1 uncharacterized protein LOC110738505 [Chenopodium quinoa]9.0e-1129.27Show/hide
Query:  MMWSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTF
        +MW++W RRN++ F  K V     +    ++          ++  + ++   S K WKAP    +KLN DA+  D    G +G I RDW+ + +      
Subjt:  MMWSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTF

Query:  VDRSWSIKVLEAKVV--VEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGV
        V   W   + E K +     L++ F L +     +I+ESDS  +I+ LN+ S+ F ++   +DE +         ++C V R  N  A NLA LT   GV
Subjt:  VDRSWSIKVLEAKVV--VEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGV

Query:  SLVWK
          VW+
Subjt:  SLVWK

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.8e-2034.17Show/hide
Query:  WSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAPM---KLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTFVDR
        W IW  RN V F  ++ S   +I  +++ +     +       + +      K    PM    LN DA+WSD   +G IGWIIR W  + VL G  FV+ 
Subjt:  WSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAPM---KLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTFVDR

Query:  SWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGVSLVW
          ++K+LEA  ++EGL  L  L    +  L +E+DS EV SLLNR   D  +    ++E + L        F KV RE N  AH+LA   S    S++W
Subjt:  SWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGVSLVW

XP_030940021.1 uncharacterized protein LOC115964936 [Quercus lobata]1.8e-1130.54Show/hide
Query:  WSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTFVD
        WSIW  RNQ            +    +++L  +  +E+  F ++ Q   L++  W AP     K+NVD   SD     SIG IIRD Q  P       + 
Subjt:  WSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTFVD

Query:  RSWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSV--DFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGVSL
          +S+++ EA  + EG+     +    V   I E D+L +I  +N  +V  DF  +   I     L+   ++C+F  ++R  N+ AH+LA     SGVS 
Subjt:  RSWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSV--DFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGVSL

Query:  VWK
        VWK
Subjt:  VWK

TrEMBL top hitse value%identityAlignment
A0A4Y1R838 Ribonuclease H-like superfamily protein1.6e-0827.36Show/hide
Query:  MMWSIWLRRNQVRF-GKKNVSLEALIFSVSQMLEVHI---------KEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQ
        ++W IW  RN + F G +    +A+   ++Q+ E ++         ++     DS+     ++  GW +P    +KLN D  W  +  +G +GW++RD  
Subjt:  MMWSIWLRRNQVRF-GKKNVSLEALIFSVSQMLEVHI---------KEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQ

Query:  DEPVLGGMTFVDRSWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLA
           +  G     R  S  + EA+ V E L+    L  + V    VESDSL +I +LN++ V   E+   + +   L+   +   F    R+ N+AAHN+A
Subjt:  DEPVLGGMTFVDRSWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLA

Query:  ALTSSSGVSLVW
        A     G    W
Subjt:  ALTSSSGVSLVW

A0A6J1CP26 uncharacterized protein LOC1110134121.1e-0928.57Show/hide
Query:  WSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPL-FDSIDQDFELSQK-------GWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPV
        W IW  RN+  F   +     +  ++ + +       + L   S ++D  L ++        WK P     KLN +A W      G IGWI+RD + E +
Subjt:  WSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPL-FDSIDQDFELSQK-------GWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPV

Query:  LGGMTFVDRSWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLA
              +    +I  LE   + EGL     + +E    + +ESDSLE I LL+R   D  E+   ++E  ++ K +       +SRE NK AH LA
Subjt:  LGGMTFVDRSWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLA

A0A6J1DNV9 uncharacterized protein LOC1110224031.4e-2034.17Show/hide
Query:  WSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAPM---KLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTFVDR
        W IW  RN V F  ++ S   +I  +++ +     +       + +      K    PM    LN DA+WSD   +G IGWIIR W  + VL G  FV+ 
Subjt:  WSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAPM---KLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTFVDR

Query:  SWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGVSLVW
          ++K+LEA  ++EGL  L  L    +  L +E+DS EV SLLNR   D  +    ++E + L        F KV RE N  AH+LA   S    S++W
Subjt:  SWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGVSLVW

A0A6J1DSV1 uncharacterized protein LOC1110236082.4e-0927.86Show/hide
Query:  WSIWLRRNQVRF-GKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQK-------GWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPV
        W IW  RN+  F G  + + +  +     ++    ++ +    S ++D  L ++        WK P     KLN DA W      G IGWI+RD + E +
Subjt:  WSIWLRRNQVRF-GKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQK-------GWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPV

Query:  LGGMTFVDRSWSIKVLEAKVVVEGLSQL-----FTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNL
              +    +I  LE   + EGL  +       + +E    + +ESDSLE I LL+R   D  E+   ++E  ++ + +       +SRE NK AH+L
Subjt:  LGGMTFVDRSWSIKVLEAKVVVEGLSQL-----FTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNL

Query:  A
        A
Subjt:  A

A0A7C9A7V4 Uncharacterized protein7.7e-0827.94Show/hide
Query:  MMWSIWLRRNQVRFGKK--NVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGM
        ++W +WL RN+  F +K  +V L  L    S    V + + +       Q   L+   W+ P    +K+NVDA+     +KG +G ++RD   +  +   
Subjt:  MMWSIWLRRNQVRFGKK--NVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAP----MKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGM

Query:  TFVDRSWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGV
             +W ++ +EA  V+ GL      W+E    L +E+DS +V   LN         S FI +A+ L   +    F  VSR  N+ AH LA L      
Subjt:  TFVDRSWSIKVLEAKVVVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGV

Query:  SLVW
          +W
Subjt:  SLVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTGGAGCATTTGGCTTAGAAGAAACCAAGTTAGGTTTGGAAAGAAGAATGTGTCCTTGGAGGCTTTGATCTTCTCGGTCTCTCAAATGTTGGAAGTGCATATCAA
GGAGGAAAGCCCTTTGTTTGATAGCATTGATCAAGATTTCGAGCTTAGTCAGAAAGGTTGGAAGGCCCCTATGAAGCTGAATGTGGATGCAACCTGGTCTGACAAAGCTC
TCAAAGGCAGCATTGGGTGGATCATCAGGGATTGGCAAGATGAGCCCGTTTTGGGCGGGATGACGTTTGTTGATCGAAGTTGGTCAATCAAGGTCCTTGAAGCTAAAGTC
GTGGTCGAGGGGTTGTCCCAACTTTTTACTCTATGGAAGGAGTCAGTTCCTCTCCTCATTGTGGAATCTGATTCCCTGGAGGTTATTAGTTTGCTCAATCGTGACAGTGT
AGACTTTTTTGAGGTTAGCCTTTTCATTGATGAAGCTATTAGGTTAGCCAAATGGTTAAATTTCTGTATTTTTTGTAAAGTTTCTAGAGAGAATAATAAAGCCGCCCACA
ATCTTGCGGCTTTAACATCCTCTTCCGGCGTTTCTTTAGTTTGGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGTGGAGCATTTGGCTTAGAAGAAACCAAGTTAGGTTTGGAAAGAAGAATGTGTCCTTGGAGGCTTTGATCTTCTCGGTCTCTCAAATGTTGGAAGTGCATATCAA
GGAGGAAAGCCCTTTGTTTGATAGCATTGATCAAGATTTCGAGCTTAGTCAGAAAGGTTGGAAGGCCCCTATGAAGCTGAATGTGGATGCAACCTGGTCTGACAAAGCTC
TCAAAGGCAGCATTGGGTGGATCATCAGGGATTGGCAAGATGAGCCCGTTTTGGGCGGGATGACGTTTGTTGATCGAAGTTGGTCAATCAAGGTCCTTGAAGCTAAAGTC
GTGGTCGAGGGGTTGTCCCAACTTTTTACTCTATGGAAGGAGTCAGTTCCTCTCCTCATTGTGGAATCTGATTCCCTGGAGGTTATTAGTTTGCTCAATCGTGACAGTGT
AGACTTTTTTGAGGTTAGCCTTTTCATTGATGAAGCTATTAGGTTAGCCAAATGGTTAAATTTCTGTATTTTTTGTAAAGTTTCTAGAGAGAATAATAAAGCCGCCCACA
ATCTTGCGGCTTTAACATCCTCTTCCGGCGTTTCTTTAGTTTGGAAATAG
Protein sequenceShow/hide protein sequence
MMWSIWLRRNQVRFGKKNVSLEALIFSVSQMLEVHIKEESPLFDSIDQDFELSQKGWKAPMKLNVDATWSDKALKGSIGWIIRDWQDEPVLGGMTFVDRSWSIKVLEAKV
VVEGLSQLFTLWKESVPLLIVESDSLEVISLLNRDSVDFFEVSLFIDEAIRLAKWLNFCIFCKVSRENNKAAHNLAALTSSSGVSLVWK