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Tan0000851 (gene) of Snake gourd v1 genome

Gene IDTan0000851
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG10:16222218..16222661
RNA-Seq ExpressionTan0000851
SyntenyTan0000851
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026128.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-5286.09Show/hide
Query:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSL
        MYSK YTKRIDNLRMP GYQPPKFQQFDGKGNLKQHIAHFVET EN G+RGD LV+QFVR+LKGNAF+WR VSMME TN KQRKG+PV+DYINRWRALSL
Subjt:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSL

Query:  DCKDRLTELSAVEMC
        DCKD+LTELSA+EMC
Subjt:  DCKDRLTELSAVEMC

TYK15513.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-5282.5Show/hide
Query:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSL
        MYSK YTKRIDNLR+P GYQPPKFQQFDGKGN K+HIAHFVET EN G+RGD LV+QFVR LKGNAF+W  VSMME TN KQRKG+PV+DYINRWRALSL
Subjt:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSL

Query:  DCKDRLTELSAVEMCIQGMH
        DCKD+LTELSAVEMC QG+H
Subjt:  DCKDRLTELSAVEMCIQGMH

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]5.4e-5170.75Show/hide
Query:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS
        MYSK YTKRIDNLRMP GYQPPKFQQFDGKGN KQH+AHFVET EN G+RGD LV+QFVR+LKGNAF+W                           RTVS
Subjt:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS

Query:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH
        MME TN KQRKG+PV+DYINRWRALSLDCKDRLTELSAVEMC QGMH
Subjt:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]5.4e-5170.75Show/hide
Query:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS
        MYSK YTKRIDNLRMP GYQPPKFQQFDGKGN KQH+AHFVET EN G+RGD LV+QFVR+LKGNAF+W                           RTVS
Subjt:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS

Query:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH
        MME TN KQRKG+PV+DYINRWRALSLDCKDRLTELSAVEMC QGMH
Subjt:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]5.4e-5170.75Show/hide
Query:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS
        MYSK YTKRIDNLRMP GYQPPKFQQFDGKGN KQH+AHFVET EN G+RGD LV+QFVR+LKGNAF+W                           RTVS
Subjt:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS

Query:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH
        MME TN KQRKG+PV+DYINRWRALSLDCKDRLTELSAVEMC QGMH
Subjt:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH

TrEMBL top hitse value%identityAlignment
A0A5A7SXL9 Ty3-gypsy retrotransposon protein4.4e-5170.75Show/hide
Query:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS
        MYSKSYTKRIDNLRMP GYQPPKFQQFDG+GN KQHIAHFVET EN G+RGD LVKQFVR+LKGNAF+W                           R VS
Subjt:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS

Query:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH
        MME TN KQRKG+PV+DYINRWRALSLDCKD+LTELSAVEMC QGMH
Subjt:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH

A0A5A7UR51 Ty3-gypsy retrotransposon protein4.4e-5169.39Show/hide
Query:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS
        +YSK YTKRIDN+RMP+GYQPPKFQQFDGKGN KQH+AHF+ETYE  GTRGDLLVKQFVRTLKGNAFDW                           R VS
Subjt:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS

Query:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH
        M+E T  KQRKG+PV+DYINRWRALSLDCKDRLTELS VEMC QGMH
Subjt:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH

A0A5D3CK73 Ty3-gypsy retrotransposon protein1.1e-5286.09Show/hide
Query:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSL
        MYSK YTKRIDNLRMP GYQPPKFQQFDGKGNLKQHIAHFVET EN G+RGD LV+QFVR+LKGNAF+WR VSMME TN KQRKG+PV+DYINRWRALSL
Subjt:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSL

Query:  DCKDRLTELSAVEMC
        DCKD+LTELSA+EMC
Subjt:  DCKDRLTELSAVEMC

A0A5D3CUF5 Ty3-gypsy retrotransposon protein1.1e-5282.5Show/hide
Query:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSL
        MYSK YTKRIDNLR+P GYQPPKFQQFDGKGN K+HIAHFVET EN G+RGD LV+QFVR LKGNAF+W  VSMME TN KQRKG+PV+DYINRWRALSL
Subjt:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSL

Query:  DCKDRLTELSAVEMCIQGMH
        DCKD+LTELSAVEMC QG+H
Subjt:  DCKDRLTELSAVEMCIQGMH

A0A5D3DTT7 Ty3-gypsy retrotransposon protein4.4e-5169.39Show/hide
Query:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS
        +YSK YTKRIDNLRMPNGYQPPKFQQFDGKGN KQH+AHF+ET E +GTRGDLLVKQF+RTLKGNAFDW                           R VS
Subjt:  MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDW---------------------------RTVS

Query:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH
        MME TN +Q+KG+ V+DYINRWRALSLDCKDRLTELSAVEMC QGMH
Subjt:  MMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTCCAAGTCGTATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATATCAGCCGCCAAAGTTTCAACAATTCGACGGGAAGGGAAATCTCAAACAACACAT
CGCTCATTTCGTTGAGACATATGAAAATCTTGGTACTAGAGGAGATCTGCTAGTCAAACAATTTGTTCGAACCCTTAAGGGAAATGCTTTCGACTGGCGAACCGTCAGCA
TGATGGAGTTTACAAATGCTAAGCAACGGAAAGGTAAACCAGTCGTTGATTATATCAACCGTTGGAGAGCTTTAAGCCTCGACTGTAAAGATAGACTCACTGAATTATCT
GCAGTTGAAATGTGCATCCAAGGCATGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATTCCAAGTCGTATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATATCAGCCGCCAAAGTTTCAACAATTCGACGGGAAGGGAAATCTCAAACAACACAT
CGCTCATTTCGTTGAGACATATGAAAATCTTGGTACTAGAGGAGATCTGCTAGTCAAACAATTTGTTCGAACCCTTAAGGGAAATGCTTTCGACTGGCGAACCGTCAGCA
TGATGGAGTTTACAAATGCTAAGCAACGGAAAGGTAAACCAGTCGTTGATTATATCAACCGTTGGAGAGCTTTAAGCCTCGACTGTAAAGATAGACTCACTGAATTATCT
GCAGTTGAAATGTGCATCCAAGGCATGCATTAG
Protein sequenceShow/hide protein sequence
MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELS
AVEMCIQGMH