CuGenDBv2

Gene ID	Tan0000879
Organism	Trichosanthes anguina (Snake gourd v1)
Description	SOSS complex subunit B homolog
Genome location	LG09:9225559..9241987
RNA-Seq Expression	Tan0000879
Synteny	Tan0000879
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0010212 - response to ionizing radiation (biological process) GO:0070876 - SOSS complex (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022150258.1 SOSS complex subunit B homolog [Momordica charantia]

1.2e-54

81.69

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        MISLKDLVPA QNNVNA+FIVL+KGKTT EGQNKAC SLV DETA VHFQLWGDE   + PSDIIRLTNGIFSY+R NNLVLRAGKRGKIEKVGEFN+VF
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLPNH
        VETPNMSE    I W PDT  SKKYVKESVLSPYS IF PN+
Subjt:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLPNH

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]

1.3e-56

82.14

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        MISLKDLVPA QNNVN +FIVLEKG TTMEGQNK CQSLV DETA VHFQLWG+E   + PSDI+RLTNGIFSY+RN+NLVLRAGKRGKIEKVGEFN+VF
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP
        VETPNMSE    IHW PDTT SKKYVKESVLSPYS IF P
Subjt:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP

XP_022968811.1 SOSS complex subunit B homolog [Cucurbita maxima]

2.5e-55

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        MISLKDLVPA QNNVN +FIVLEKG TTM+GQNK CQSLV DETA VHFQLWG+E   + PSDI+RL NGIFSY+RNNNLVLRAGKRGKIEKVGEFN+VF
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP
        VETPNMSE    IHW PDT+ SKKYVKESV+SPYS IF P
Subjt:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]

3.0e-56

80.71

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        MISLKDLVPA QNNVN +FIVL+KG TT+EGQNK CQSLV DETA VHFQLWG+E   + PSDI+RLTNGIFSY+RNNNLVLRAGKRGK+EKVGEFN+VF
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP
        VETPNMSE    IHW PDTT SKKYVKESVLSPYS IF P
Subjt:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]

5.0e-56

82.14

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        MI+LKDLVPA QNNVN +FIVLEKG T MEGQNKACQSLV DETA VHFQLWGDE   + PSDIIRLTNGIFSY+RNNNLVLRAGKRGKIEKVGEF +VF
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP
        VETPNMSE    IHW PDTT S KYVKESVLSPYS IF P
Subjt:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BPN4 SOSS complex subunit B homolog

6.0e-55

80.71

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        MI LKDLVPA QN VN +FIVLEKG TTMEGQNK CQSLV DETA VHFQLWGDE   + PSDIIRLTNGIFSY+RNNNLVLRAGKRGKIEKVGEF +VF
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP
        VETPNMSE    IHW PDT  S KYVKESVLSPYS IF P
Subjt:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP

A0A5D3CIR3 SOSS complex subunit B-like protein

6.0e-55

80.71

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        MI LKDLVPA QN VN +FIVLEKG TTMEGQNK CQSLV DETA VHFQLWGDE   + PSDIIRLTNGIFSY+RNNNLVLRAGKRGKIEKVGEF +VF
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP
        VETPNMSE    IHW PDT  S KYVKESVLSPYS IF P
Subjt:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP

A0A6J1D803 SOSS complex subunit B homolog

6.0e-55

81.69

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        MISLKDLVPA QNNVNA+FIVL+KGKTT EGQNKAC SLV DETA VHFQLWGDE   + PSDIIRLTNGIFSY+R NNLVLRAGKRGKIEKVGEFN+VF
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLPNH
        VETPNMSE    I W PDT  SKKYVKESVLSPYS IF PN+
Subjt:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLPNH

A0A6J1HAL0 SOSS complex subunit B homolog

6.4e-57

82.14

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        MISLKDLVPA QNNVN +FIVLEKG TTMEGQNK CQSLV DETA VHFQLWG+E   + PSDI+RLTNGIFSY+RN+NLVLRAGKRGKIEKVGEFN+VF
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP
        VETPNMSE    IHW PDTT SKKYVKESVLSPYS IF P
Subjt:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP

A0A6J1HZ66 SOSS complex subunit B homolog

1.2e-55

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        MISLKDLVPA QNNVN +FIVLEKG TTM+GQNK CQSLV DETA VHFQLWG+E   + PSDI+RL NGIFSY+RNNNLVLRAGKRGKIEKVGEFN+VF
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP
        VETPNMSE    IHW PDT+ SKKYVKESV+SPYS IF P
Subjt:  VETPNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP

SwissProt top hits

e value

%identity

Alignment

A6QLK2 SOSS complex subunit B1

2.1e-12

38.18

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Query:  LKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSL-VGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVFVE
        +KD+ P  + N+N  FIVLE G+ T        ++  V D+T +++  +W D G  + P DIIRLT G  S  +   L L  G+ G ++K+GEF +V+ E
Subjt:  LKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSL-VGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVFVE

Query:  TPNMSEINKQ
         PN SE N +
Subjt:  TPNMSEINKQ

Q54X41 SOSS complex subunit B homolog

3.8e-14

38.14

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Query:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        +I + ++ P ++ N+N  FIVL+KG  T + +    Q LV D TA+++  +W   G  + P DI+RL  G +S      L L  GK G IEK+GEF   F
Subjt:  MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSEINKQIHWAPD
        VE PN+S     +H  P+
Subjt:  VETPNMSEINKQIHWAPD

Q8R2Y9 SOSS complex subunit B1

2.1e-12

38.18

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Query:  LKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSL-VGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVFVE
        +KD+ P  + N+N  FIVLE G+ T        ++  V D+T +++  +W D G  + P DIIRLT G  S  +   L L  G+ G ++K+GEF +V+ E
Subjt:  LKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSL-VGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVFVE

Query:  TPNMSEINKQ
         PN SE N +
Subjt:  TPNMSEINKQ

Q9BQ15 SOSS complex subunit B1

2.1e-12

38.18

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Query:  LKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSL-VGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVFVE
        +KD+ P  + N+N  FIVLE G+ T        ++  V D+T +++  +W D G  + P DIIRLT G  S  +   L L  G+ G ++K+GEF +V+ E
Subjt:  LKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSL-VGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVFVE

Query:  TPNMSEINKQ
         PN SE N +
Subjt:  TPNMSEINKQ

Q9VM17 SOSS complex subunit B homolog

1.0e-14

41.67

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Query:  ISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSL-VGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF
        I +KD+ P  + N+N  FIVLE G  T+  +N+  ++  VGD TA ++  +W + G  + P DI+RLT G  S  R + L L +GK G++ K+GE+ +VF
Subjt:  ISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSL-VGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVF

Query:  VETPNMSE
         E+ NMSE
Subjt:  VETPNMSE

Arabidopsis top hits

e value

%identity

Alignment

AT5G63690.1 Nucleic acid-binding, OB-fold-like protein

2.7e-39

54.74

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Query:  LKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVFVET
        LKD+VPA QNN++  FI+L+K K++       C +L  DETA VH QLWGDE       DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + FVET
Subjt:  LKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVFVET

Query:  PNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP
        PN+SE    I W PD    K+Y++  V+S YS IF P
Subjt:  PNMSEINKQIHWAPDTTYSKKYVKESVLSPYSHIFLP

Sequences

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CDS sequence

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ATGATATCTCTCAAGGACTTGGTGCCAGCAACCCAAAACAATGTGAATGCAGAATTCATAGTTCTGGAGAAAGGGAAGACAACAATGGAAGGACAAAACAAGGCATGTCA
ATCACTGGTGGGCGACGAAACAGCAACGGTTCACTTCCAGCTATGGGGAGATGAAGGTGCGACCATGACACCGAGCGACATCATACGGTTGACGAATGGGATATTCTCCT
ACACCCGAAACAATAATCTGGTGTTGAGGGCAGGGAAGAGAGGGAAAATAGAAAAGGTGGGAGAGTTCAACATCGTGTTTGTAGAGACACCGAATATGAGCGAGATTAAC
AAACAGATCCATTGGGCTCCCGACACGACTTACTCGAAGAAGTATGTGAAGGAATCCGTTCTATCCCCCTATTCTCACATCTTTCTGCCAAACCATTGA

mRNA sequence

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Protein sequence

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MISLKDLVPATQNNVNAEFIVLEKGKTTMEGQNKACQSLVGDETATVHFQLWGDEGATMTPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNIVFVETPNMSEIN
KQIHWAPDTTYSKKYVKESVLSPYSHIFLPNH

Tan0000879 (gene) of Snake gourd v1 genome