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Tan0000880 (gene) of Snake gourd v1 genome

Gene IDTan0000880
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG04:20400178..20402000
RNA-Seq ExpressionTan0000880
SyntenyTan0000880
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035545.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-3280.41Show/hide
Query:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
        M DVLAKK+E L TAK IMDSLK MFGQP   L+HEAIKYIY KRMKEGTSVREHVLDMM+ F IAEVNGGAIDEAN  HRFQ LTK KGKE+EANV
Subjt:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
KAA0041127.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-3279.38Show/hide
Query:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
        M+DVLAKK+E L TAK IMDSLK +FGQP   L HEAIKYIY K+MKEGTSVREHVLDMM+HFNIAE+NGG IDEANQ  RFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
KAA0042331.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-3279.38Show/hide
Query:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
        M+DVLAKK+E L T K IMDSLK MFGQP   LRHEAIKYIY KRMKEGTS++EHVLDMM+HFNIAEVNGGAID ANQ   FQ LTK KGKEVEANV
Subjt:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
TYJ98401.1 gag/pol protein [Cucumis melo var. makuwa]7.2e-3482.47Show/hide
Query:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
        M+DVLAKK+E L TAK IMDSLK MFGQP   LRHE IKYIY KRMKEGTSVREHVL+MM+HFNIAEVNGGAIDEANQ  RFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
TYK27705.1 gag/pol protein [Cucumis melo var. makuwa]7.9e-3377.32Show/hide
Query:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
        M+DVLAKK++ L TAK IMDSLKEMFGQPS  LRHEAIKYIY  +MKEGTSVREH+LD M+HFNIAEVN G I+EANQLHRFQ LT  K KEVE NV
Subjt:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
TrEMBL top hitse value%identityAlignment
A0A5A7THM4 Gag/pol protein8.5e-3379.38Show/hide
Query:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
        M+DVLAKK+E L TAK IMDSLK +FGQP   L HEAIKYIY K+MKEGTSVREHVLDMM+HFNIAE+NGG IDEANQ  RFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
A0A5D3BI96 Gag/pol protein3.5e-3482.47Show/hide
Query:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
        M+DVLAKK+E L TAK IMDSLK MFGQP   LRHE IKYIY KRMKEGTSVREHVL+MM+HFNIAEVNGGAIDEANQ  RFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
A0A5D3CU35 Gag/pol protein5.0e-3379.38Show/hide
Query:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
        M+DVLAKK+E L T K IMDSLK MFGQP   LRHEAIKYIY KRMKEGTS++EHVLDMM+HFNIAEVNGGAID ANQ   FQ LTK KGKEVEANV
Subjt:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
A0A5D3DWL6 Gag/pol protein3.8e-3377.32Show/hide
Query:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
        M+DVLAKK++ L TAK IMDSLKEMFGQPS  LRHEAIKYIY  +MKEGTSVREH+LD M+HFNIAEVN G I+EANQLHRFQ LT  K KEVE NV
Subjt:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
A0A5D3E5U1 Gag/pol protein8.5e-3380.41Show/hide
Query:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
        M DVLAKK+E L TAK IMDSLK MFGQP   L+HEAIKYIY KRMKEGTSVREHVLDMM+ F IAEVNGGAIDEAN  HRFQ LTK KGKE+EANV
Subjt:  MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATGTATTGGCTAAGAAATACGAATGCTTAGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGACAACCGTCATCGGTTCTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTCAATATTGCTGAAGTAAATGGTGGCGCCATCG
ACGAGGCAAATCAGCTCCATCGTTTCCAAACTCTTACAAAAGCTAAGGGAAAAGAGGTGGAGGCAAATGTTGATCTGGAGATGCCCAGCGCACGTGTTGGTGCAATATCC
TAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGATGTATTGGCTAAGAAATACGAATGCTTAGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGACAACCGTCATCGGTTCTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTCAATATTGCTGAAGTAAATGGTGGCGCCATCG
ACGAGGCAAATCAGCTCCATCGTTTCCAAACTCTTACAAAAGCTAAGGGAAAAGAGGTGGAGGCAAATGTTGATCTGGAGATGCCCAGCGCACGTGTTGGTGCAATATCC
TAA
Protein sequenceShow/hide protein sequence
MTDVLAKKYECLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEANQLHRFQTLTKAKGKEVEANVDLEMPSARVGAIS