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Tan0000883 (gene) of Snake gourd v1 genome

Gene IDTan0000883
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG04:35812285..35814176
RNA-Seq ExpressionTan0000883
SyntenyTan0000883
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041127.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-3178.35Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ESL TAK IMDSLK +FGQP   L HEAIKYIY K+MKEGTS REHVLDMM+H NIAE+NGG IDEAN  QRFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV

KAA0041922.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-3180.41Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV
        M++VLAKK+ESL TAK  MDSLK MFGQP   LRHEAIKYIY KRMKEGTS REHVLDMM+H NIAEVNGGAIDEAN  QRFQ L K KGKEVEANV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV

KAA0042331.1 gag/pol protein [Cucumis melo var. makuwa]7.4e-3279.38Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ESL T K IMDSLK MFGQP   LRHEAIKYIY KRMKEGTS +EHVLDMM+H NIAEVNGGAID ANQ   FQ LTK KGKEVEANV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV

KAA0047422.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-3180.41Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ESL TAK IMDSLK MFGQP   LRHEAIKYIY K MKEGTS REHVLDMM+H NIAEVN GAIDEAN  QRFQ LTK K KEVEANV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV

TYJ98401.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-3381.44Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ESL TAK IMDSLK MFGQP   LRHE IKYIY KRMKEGTS REHVL+MM+H NIAEVNGGAIDEAN  QRFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV

TrEMBL top hitse value%identityAlignment
A0A5A7THM4 Gag/pol protein7.9e-3278.35Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ESL TAK IMDSLK +FGQP   L HEAIKYIY K+MKEGTS REHVLDMM+H NIAE+NGG IDEAN  QRFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV

A0A5D3BI96 Gag/pol protein3.2e-3381.44Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ESL TAK IMDSLK MFGQP   LRHE IKYIY KRMKEGTS REHVL+MM+H NIAEVNGGAIDEAN  QRFQ LTK KGKEVEANV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV

A0A5D3BWP2 Gag/pol protein1.8e-3180.41Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ESL TAK IMDSLK MFGQP   LRHEAIKYIY K MKEGTS REHVLDMM+H NIAEVN GAIDEAN  QRFQ LTK K KEVEANV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV

A0A5D3CU35 Gag/pol protein3.6e-3279.38Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV
        M+DVLAKK+ESL T K IMDSLK MFGQP   LRHEAIKYIY KRMKEGTS +EHVLDMM+H NIAEVNGGAID ANQ   FQ LTK KGKEVEANV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV

A0A5D3D345 Gag/pol protein1.8e-3180.41Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV
        M++VLAKK+ESL TAK  MDSLK MFGQP   LRHEAIKYIY KRMKEGTS REHVLDMM+H NIAEVNGGAIDEAN  QRFQ L K KGKEVEANV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATGTATTGGCTAAGAAATACGAATCCTTGGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGACAACCGTCATCGGTTCTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCTCATTTAGAGAACATGTCCTGGACATGATGGTCCACGTCAATATTGCTGAAGTAAATGGTGGCGCCATCG
ACGAGGCAAATCAGCTCCAACGTTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGCAAATGTTAAAATTATAACGTCGTTCAAAGTTATGCCTATTTGTAGG
TTATCCAAAAGAAACAAAAGGTGGTCTGTTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGATGTATTGGCTAAGAAATACGAATCCTTGGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGACAACCGTCATCGGTTCTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCTCATTTAGAGAACATGTCCTGGACATGATGGTCCACGTCAATATTGCTGAAGTAAATGGTGGCGCCATCG
ACGAGGCAAATCAGCTCCAACGTTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGCAAATGTTAAAATTATAACGTCGTTCAAAGTTATGCCTATTTGTAGG
TTATCCAAAAGAAACAAAAGGTGGTCTGTTTTATGA
Protein sequenceShow/hide protein sequence
MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSFREHVLDMMVHVNIAEVNGGAIDEANQLQRFQTLTKAKGKEVEANVKIITSFKVMPICR
LSKRNKRWSVL