CuGenDBv2

Gene ID	Tan0000912
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Structure-specific endonuclease subunit SLX1 homolog
Genome location	LG08:75481656..75484282
RNA-Seq Expression	Tan0000912
Synteny	Tan0000912
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0051569 - regulation of histone H3-K4 methylation (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0016593 - Cdc73/Paf1 complex (cellular component) GO:0033557 - Slx1-Slx4 complex (cellular component) GO:0000993 - RNA polymerase II complex binding (molecular function) GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function) GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060004.1 Structure-specific endonuclease subunit SLX1 [Cucumis melo var. makuwa]

2.6e-114

73.67

Show/hide

Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW
        +QFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK++KNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQGVLENEDDW
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW

Query:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNE-LGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG
        EY+RE EEI SFQVYGSMKEV NE+PQKL+DYQTGTDG P   L G D+ LE +E+ PP  C  S++                               AG
Subjt:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNE-LGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG

Query:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL
         SRTEIII+DGEE+Q EGSG+NLQ +Q GRKNLTSGIA+E+ KVSRC+NG  P VEYEVIDVSTPSPDCRTSSHRFKRR+TS GKSE+IDLTKSPTFI+L
Subjt:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL

KGN66284.2 hypothetical protein Csa_023148 [Cucumis sativus]

1.1e-109

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Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW
        +QFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK++KNAAGCPSLPEHMKVQVSPINELPCYSEGDQ +LENE DW
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW

Query:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDG-TPNELGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG
        EYNRE EEI  F+VYGSMKEV NE+PQKL+DYQTGTDG  P+ L G D+ LE +E+ PP  C  S+I                             I AG
Subjt:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDG-TPNELGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG

Query:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL
         SRTEI+I+D EE+QLEGS +NLQ +Q GR+NLTSGIA+E+ KVSR NNG+ P VEYEVIDVSTPSPDCRTSSHRFKRR+TS GKSE+IDLTKSPTFI+L
Subjt:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL

XP_004153269.1 structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus]

1.1e-109

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Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW
        +QFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK++KNAAGCPSLPEHMKVQVSPINELPCYSEGDQ +LENE DW
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW

Query:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDG-TPNELGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG
        EYNRE EEI  F+VYGSMKEV NE+PQKL+DYQTGTDG  P+ L G D+ LE +E+ PP  C  S+I                             I AG
Subjt:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDG-TPNELGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG

Query:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL
         SRTEI+I+D EE+QLEGS +NLQ +Q GR+NLTSGIA+E+ KVSR NNG+ P VEYEVIDVSTPSPDCRTSSHRFKRR+TS GKSE+IDLTKSPTFI+L
Subjt:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL

XP_008457313.1 PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]

2.6e-114

73.67

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Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW
        +QFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK++KNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQGVLENEDDW
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW

Query:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNE-LGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG
        EY+RE EEI SFQVYGSMKEV NE+PQKL+DYQTGTDG P   L G D+ LE +E+ PP  C  S++                               AG
Subjt:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNE-LGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG

Query:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL
         SRTEIII+DGEE+Q EGSG+NLQ +Q GRKNLTSGIA+E+ KVSRC+NG  P VEYEVIDVSTPSPDCRTSSHRFKRR+TS GKSE+IDLTKSPTFI+L
Subjt:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL

XP_038894793.1 structure-specific endonuclease subunit SLX1 [Benincasa hispida]

4.2e-112

71.48

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Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW
        +QFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKY+KNAAGCPSLP+HMKVQVSPINELPCYSEGDQ VLENEDDW
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW

Query:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNELGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAGM
        EYNRE EEI SF+VYGSMKEV NE+PQKL+D+Q  TDG P EL G D+  E++E+ PP  C  S+I                             I   +
Subjt:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNELGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAGM

Query:  SRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGFPPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL
        SRTEIII+DG+EDQ+EG+G+NL+ QQ  RKNL+SGIA+E+ KVSRCN   PPVEYEVIDVSTPSPDCRT+SHR KR++TS G+SEIIDLTKSPTFI+L
Subjt:  SRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGFPPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M0Y6 Structure-specific endonuclease subunit SLX1 homolog

5.6e-110

Show/hide

Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW
        +QFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK++KNAAGCPSLPEHMKVQVSPINELPCYSEGDQ +LENE DW
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW

Query:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDG-TPNELGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG
        EYNRE EEI  F+VYGSMKEV NE+PQKL+DYQTGTDG  P+ L G D+ LE +E+ PP  C  S+I                             I AG
Subjt:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDG-TPNELGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG

Query:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL
         SRTEI+I+D EE+QLEGS +NLQ +Q GR+NLTSGIA+E+ KVSR NNG+ P VEYEVIDVSTPSPDCRTSSHRFKRR+TS GKSE+IDLTKSPTFI+L
Subjt:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL

A0A1S3C574 Structure-specific endonuclease subunit SLX1 homolog

1.3e-114

73.67

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Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW
        +QFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK++KNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQGVLENEDDW
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW

Query:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNE-LGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG
        EY+RE EEI SFQVYGSMKEV NE+PQKL+DYQTGTDG P   L G D+ LE +E+ PP  C  S++                               AG
Subjt:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNE-LGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG

Query:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL
         SRTEIII+DGEE+Q EGSG+NLQ +Q GRKNLTSGIA+E+ KVSRC+NG  P VEYEVIDVSTPSPDCRTSSHRFKRR+TS GKSE+IDLTKSPTFI+L
Subjt:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL

A0A5D3BBR0 Structure-specific endonuclease subunit SLX1 homolog

1.3e-114

73.67

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Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW
        +QFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK++KNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQGVLENEDDW
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW

Query:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNE-LGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG
        EY+RE EEI SFQVYGSMKEV NE+PQKL+DYQTGTDG P   L G D+ LE +E+ PP  C  S++                               AG
Subjt:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNE-LGGYDRGLEDDEREPPIMCASSFI-----------------------------ISAG

Query:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL
         SRTEIII+DGEE+Q EGSG+NLQ +Q GRKNLTSGIA+E+ KVSRC+NG  P VEYEVIDVSTPSPDCRTSSHRFKRR+TS GKSE+IDLTKSPTFI+L
Subjt:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGF-PPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL

A0A6J1DNH4 Structure-specific endonuclease subunit SLX1 homolog

1.6e-101

70.24

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Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW
        +QFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKY+ NAAGCPSLPEHMKVQVSPI++LPCYSEGDQGV ENEDD 
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW

Query:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTD-------------------GTPNELGGYDRGLEDDEREPPIMCASSFIISAGMSRTEIIIEDG
        EYNRE+EE+ SF+VYGS KEVPNEIPQKL D   G D                   G  +++ G+++ LED +R PP  CA S+ + AG S TEIIIEDG
Subjt:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTD-------------------GTPNELGGYDRGLEDDEREPPIMCASSFIISAGMSRTEIIIEDG

Query:  EEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGFPPVEYEVIDVSTPSPDCRTSSH-RFKRRITSGGKSEIIDLTKSPTFIRL
        EEDQ EG+GVNLQ++         G    M KV RCN G+PP EYEVIDV TPSPDCRTSS+ RFKRRITS   SEIIDLTKSPTFIRL
Subjt:  EEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGFPPVEYEVIDVSTPSPDCRTSSH-RFKRRITSGGKSEIIDLTKSPTFIRL

A0A6J1I681 Structure-specific endonuclease subunit SLX1 homolog

1.3e-95

68.63

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Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW
        +QFEWAWQHPNESLAVRSAAATFKSLSG+ANK+KLAYTMLTLPAWCSLNITVNYFSTKY+ NAAGCPSLP HM+VQ+SPI+ELPCYSEGD+ VLENE+DW
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDW

Query:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNELGGYDRGLEDDEREPPIMCASSFIISAGMSR----------------------TEIII
        EYN+E+EE+ S QV+G M EVPNEIPQ L+DY TGTDG P+EL G D  L+D+E+ P   C  S+ I  G+S                       TEIII
Subjt:  EYNREFEEIRSFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNELGGYDRGLEDDEREPPIMCASSFIISAGMSR----------------------TEIII

Query:  EDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGFPPVEYEVIDVSTPSPDCRTSSHRFKRRI
        +DGEE+QLEGSG+ LQ QQ GRK   SGIATE+ KVS    G PPVEYEVIDVSTPSP CRTSSH+FKRR+
Subjt:  EDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGFPPVEYEVIDVSTPSPDCRTSSHRFKRRI

SwissProt top hits

e value

%identity

Alignment

Q5PQP5 Structure-specific endonuclease subunit SLX1

1.0e-04

28.12

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Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSP------INELPCYSEGD
        ++FEWAWQHP  S  +       +S +     +++   ML +P W  L +TV +    +      CP+ P HM +   P      + + P  SE D
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSP------INELPCYSEGD

Q8BX32 Structure-specific endonuclease subunit SLX1

6.1e-05

28.12

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Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSP------INELPCYSEGD
        ++FEWAWQHP  S  +       +S +  A  +++   ML +P W  L +T+ +    +      CP+ P HM +   P      + + P  SE D
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSP------INELPCYSEGD

Arabidopsis top hits

e value

%identity

Alignment

AT2G30350.1 Excinuclease ABC, C subunit, N-terminal

1.2e-35

36.36

Show/hide

Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQG--------
        +QFEWAWQHP ES+AVR AAA FKS SGVA+K+KL YTML LPAW SLN+TVNYFS+KY  +    PSLP HMKVQV  + +L  +++ D          
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQG--------

Query:  --VLENEDDWE------------------YNREFEEIRS-FQVYGSMKEVPNEIPQKLVDYQTGTDGTPNELGGYDRG-LEDDEREPPIMCASSFIISAG
          V E +DD +                   +R FE+ +    V+     + N     L+D +   +   +E+     G +   E+EP  +          
Subjt:  --VLENEDDWE------------------YNREFEEIRS-FQVYGSMKEVPNEIPQKLVDYQTGTDGTPNELGGYDRG-LEDDEREPPIMCASSFIISAG

Query:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGFPPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFI
            E I+ED       GS   ++++   R+N  +   TE             V+ EVID+ TPSP CR  S   +RR+     SE IDLT SP FI
Subjt:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGFPPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFI

AT2G30350.2 Excinuclease ABC, C subunit, N-terminal

1.2e-35

36.36

Show/hide

Query:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQG--------
        +QFEWAWQHP ES+AVR AAA FKS SGVA+K+KL YTML LPAW SLN+TVNYFS+KY  +    PSLP HMKVQV  + +L  +++ D          
Subjt:  MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQG--------

Query:  --VLENEDDWE------------------YNREFEEIRS-FQVYGSMKEVPNEIPQKLVDYQTGTDGTPNELGGYDRG-LEDDEREPPIMCASSFIISAG
          V E +DD +                   +R FE+ +    V+     + N     L+D +   +   +E+     G +   E+EP  +          
Subjt:  --VLENEDDWE------------------YNREFEEIRS-FQVYGSMKEVPNEIPQKLVDYQTGTDGTPNELGGYDRG-LEDDEREPPIMCASSFIISAG

Query:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGFPPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFI
            E I+ED       GS   ++++   R+N  +   TE             V+ EVID+ TPSP CR  S   +RR+     SE IDLT SP FI
Subjt:  MSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNGFPPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGTTTGAATGGGCCTGGCAGCATCCGAATGAGTCATTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCCAACAAAGTTAAACTTGCATA
CACTATGCTCACACTTCCAGCTTGGTGTAGTTTGAACATCACTGTAAACTACTTCTCAACAAAGTACATAAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGA
AGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCTGAAGGAGATCAAGGTGTACTTGAAAATGAAGATGACTGGGAGTATAATAGAGAATTTGAGGAAATTCGT
AGTTTTCAAGTATATGGATCGATGAAAGAAGTTCCAAATGAAATTCCTCAAAAGTTAGTGGATTACCAGACAGGTACAGATGGAACACCTAATGAATTAGGTGGATACGA
TAGAGGACTGGAGGATGATGAACGAGAACCACCTATTATGTGTGCTTCGTCTTTTATCATATCAGCGGGTATGTCTAGGACCGAAATCATCATTGAAGATGGAGAGGAAG
ACCAATTAGAAGGGAGTGGTGTGAACTTGCAGCGGCAACAAGCTGGTAGGAAGAATTTAACATCAGGAATAGCTACTGAAATGAGAAAAGTTTCAAGATGTAATAATGGG
TTTCCTCCTGTTGAATATGAGGTTATAGATGTGTCTACGCCGTCTCCCGACTGCAGAACAAGTTCGCATAGATTCAAGAGAAGAATTACTTCTGGTGGTAAGTCTGAGAT
TATTGACTTAACCAAATCTCCTACGTTTATCCGATTGTAG

mRNA sequence

Show/hide mRNA sequence

ACAACGTATTCTAATCTGAAAAAACTGCGAATTTCGATGCTCGACTGACATGGCCATGTTCAGAAATGCCCATCCTTTTATTAAGGGTTTTGCGTGTGGTTTCCTGAAAA
AATTAGGGCTTCGGGCGGAACGGTAAATTCACGAACCAGCCCTTTGCTGCAATGAACCGGTTTAAAATTCCCAAGCCATTTCTATAGGTAAATAAATACCCTTTCAAGTT
TTACGCCAACGGTCGAATTGTATTTTTGTGCAAATTTTCATCGTCTAGAGAGAGAGATGAGGAAGAGGAAAGAGAAATCAGAGATCTCTAAACCCACGGCTGTTGCAGAG
GAGGAGAAGGAAGATGATGAAGATGAAGAAAGGGGCAACGAAGCGAATGGCTTCTTTTCATGCTATCTCTTGGCCTCTGCCTGCCCTCGTTACAAAGGCCATACCTATAT
CGGATTCACAGTGAACCCGAAACGTAGAATCAGGCAGCACAACGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAAATGGTCTTGTGCATTT
ATGGCTTCCCCACTAATGTCTCTGCTCTTCAGGTTATATTTCCAGGCTGTGAGCTATACAAGTAGTTGATTGTGCGTCTTTTATATATCTCGACTGCCTTCTATTAGCTG
AATGACGCTTCGAAATATATTTTAGGGGTTTCGGACTGAAGGAATTTACCAAAATGTGTTGGTGGTTTCCTTTTTAATGTCTGTCTTGATTTACTTTCCAACAATGCTAG
AATGTGATGTTCTAACTATGGATGCAGTTTGAATGGGCCTGGCAGCATCCGAATGAGTCATTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGC
CAACAAAGTTAAACTTGCATACACTATGCTCACACTTCCAGCTTGGTGTAGTTTGAACATCACTGTAAACTACTTCTCAACAAAGTACATAAAGAATGCGGCTGGTTGCC
CAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCTGAAGGAGATCAAGGTGTACTTGAAAATGAAGATGACTGGGAGTATAAT
AGAGAATTTGAGGAAATTCGTAGTTTTCAAGTATATGGATCGATGAAAGAAGTTCCAAATGAAATTCCTCAAAAGTTAGTGGATTACCAGACAGGTACAGATGGAACACC
TAATGAATTAGGTGGATACGATAGAGGACTGGAGGATGATGAACGAGAACCACCTATTATGTGTGCTTCGTCTTTTATCATATCAGCGGGTATGTCTAGGACCGAAATCA
TCATTGAAGATGGAGAGGAAGACCAATTAGAAGGGAGTGGTGTGAACTTGCAGCGGCAACAAGCTGGTAGGAAGAATTTAACATCAGGAATAGCTACTGAAATGAGAAAA
GTTTCAAGATGTAATAATGGGTTTCCTCCTGTTGAATATGAGGTTATAGATGTGTCTACGCCGTCTCCCGACTGCAGAACAAGTTCGCATAGATTCAAGAGAAGAATTAC
TTCTGGTGGTAAGTCTGAGATTATTGACTTAACCAAATCTCCTACGTTTATCCGATTGTAGTAGAAGTGAACAATGGATGGATTTGGATTCTGAATAAAATTACAGACGA
GGGTTGTAAGCATACATGGTCTCGTATGCATTTTTTCATGAGGATTTCCATTTTCAACCCTTTCAGTGGCAACGTGGGCTCAATCTTGTTTGACCAAATAGATAGAGAAA
CAACAACATGTTGTATAAGTTATACATAATAGCCTTTCTTTCAAAGGCCATCGATTCCTAAGGAAATTAAGTGAGAAAAGGACATTCGGATGGCGAACGTGGTTTCAAGA
ATGTCGGCAGATTTTCTTTTCAATCTACTTTCAGTAATTATTTAAACCCACAAATTCGATTCAACTATGATTTTCTGGTAGCATGTGGATTTGAAGAAACTCTATTAAGA
ATTTCATACAAAAATTGTGATTCTTCATCTTTTATTTTTTTGAAAAATTACAACTCTTCTCACTGTAATGTTTGGTTCATGTTATCTTAATTACCC

Protein sequence

Show/hide protein sequence

MQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDWEYNREFEEIR
SFQVYGSMKEVPNEIPQKLVDYQTGTDGTPNELGGYDRGLEDDEREPPIMCASSFIISAGMSRTEIIIEDGEEDQLEGSGVNLQRQQAGRKNLTSGIATEMRKVSRCNNG
FPPVEYEVIDVSTPSPDCRTSSHRFKRRITSGGKSEIIDLTKSPTFIRL

Tan0000912 (gene) of Snake gourd v1 genome