; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0000938 (gene) of Snake gourd v1 genome

Gene IDTan0000938
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionexosome complex component RRP41-like
Genome locationLG05:1810363..1815388
RNA-Seq ExpressionTan0000938
SyntenyTan0000938
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0009845 - seed germination (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0016740 - transferase activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570792.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.9e-13395.74Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPA +TYSPS T HKTRPPIFR+DDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEEN+QDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE

XP_022140702.1 exosome complex component RRP41-like [Momordica charantia]5.2e-13696.11Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPA TTYSPS TIHKTRPPIFR+D+ DWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEEN+QDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATIS++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISEE

XP_022944714.1 exosome complex component RRP41-like [Cucurbita moschata]1.9e-13395.74Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPA TTYSPS T HKTRPPIFR+DDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEEN+QDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE

XP_022986160.1 exosome complex component RRP41-like [Cucurbita maxima]1.9e-13395.74Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPA +TYSPS T HKTRPPIFR+DDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEEN+QDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE

XP_023512894.1 exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo]1.6e-13295.35Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPA +TYSPS T  KTRPPIFR+DDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEEN+QDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE

TrEMBL top hitse value%identityAlignment
A0A0A0KEK6 Uncharacterized protein1.9e-13193.41Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP  TTYSPS T+HKTRP +FRTDDV+WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        FSTPVRGQGSENK+FSSMLHK+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID +LEEEN+QDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESA-TISEE
        LMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV+IMRSCLKESA TISEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESA-TISEE

A0A1S3CKF3 exosome complex component RRP41-like9.9e-13394.59Show/hide
Query:  MAKKATP-APTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP   TTYSPS T+HKTRPP+FRTDDV+WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATP-APTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDG
        TFSTPVRGQGSENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP+LEEEN+QDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDG

Query:  SLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE
        SLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV+IMRSCLKES ATISEE
Subjt:  SLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE

A0A6J1CHT0 exosome complex component RRP41-like2.5e-13696.11Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPA TTYSPS TIHKTRPPIFR+D+ DWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEEN+QDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATIS++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISEE

A0A6J1FYV1 exosome complex component RRP41-like9.0e-13495.74Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPA TTYSPS T HKTRPPIFR+DDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEEN+QDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE

A0A6J1JDA9 exosome complex component RRP41-like9.0e-13495.74Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPA +TYSPS T HKTRPPIFR+DDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEEN+QDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISEE

SwissProt top hitse value%identityAlignment
A2RVK7 Exosome complex component RRP41-like2.0e-10673.54Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   A  TYSP + + ++R PIF+  D+DW RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        F++P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  +DGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISEE
         M+TCMPSRYE+TQLTITGEW+T  INE MQLCLDAS KL +IMR CLK+SA+ S+E
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISEE

O26779 Exosome complex component Rrp411.2e-2631.22Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIIL
        VR DGR F + RP     G +  A GS+Y EFG  K++V+V+GPRE++ + +   D   + C  +   FS   R   G    + E S +  +AL  A+IL
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIIL

Query:  ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTITGEWSTAKINEG
        E FP++ +DVF  VLE+ G      I+ AS+ALADAGI + D+V + +    G  +++D   EE+      + +  +P   E+T L   G  +  +    
Subjt:  ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTITGEWSTAKINEG

Query:  MQLCLDASCKLVKIMRSCLKE
        + L ++   ++ ++ +  L++
Subjt:  MQLCLDASCKLVKIMRSCLKE

O59223 Exosome complex component Rrp411.6e-2633.05Show/hide
Query:  RPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTI
        ++  ALE A+ILE FP+T++DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+N+ +  + +  MP + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTI

Query:  TGEWSTAKINEGMQLCLDASCKLVKIMRSCLKE
         G  +  +  E ++L +  +  + +  R  LKE
Subjt:  TGEWSTAKINEGMQLCLDASCKLVKIMRSCLKE

Q6P0I8 Exosome complex component MTR36.2e-3136.49Show/hide
Query:  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGSENKEFSSMLHKALEGAIILETFPK
        RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C      FS   RG   QGSE ++ S+ L ++L   + L  +P+
Subjt:  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGSENKEFSSMLHKALEGAIILETFPK

Query:  TTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEE--------NHQDGSLMITCMPSRYEVTQLTITGEWSTAKI
        + +DV  +VLE+ GS L   ++CAS+ALADAGI +YD+V   ++   G   L+DP   EE            G + +  +P+  +V+ L   GE     +
Subjt:  TTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEE--------NHQDGSLMITCMPSRYEVTQLTITGEWSTAKI

Query:  NEGMQLCLDASCKLVKIMRSCL
         E M+ C+D   KL  +++  L
Subjt:  NEGMQLCLDASCKLVKIMRSCL

Q8U0L9 Exosome complex component Rrp419.2e-2733.48Show/hide
Query:  RPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTI
        ++  ALE A+ILE FP+T +DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+N+ +  + +  MP + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTI

Query:  TGEWSTAKINEGMQLCLDASCKLVKIMRSCLKE
         G  +  +  E ++L +  +  + +  R  LKE
Subjt:  TGEWSTAKINEGMQLCLDASCKLVKIMRSCLKE

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein5.0e-1231.29Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein5.0e-1231.29Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE

AT3G61620.1 3'-5'-exoribonuclease family protein5.9e-2130.04Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  I+
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTITGEWSTAKINE
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P   +V+ L +  +        
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTITGEWSTAKINE

Query:  GMQLCLDASCKLVKIMRSCLKES
           L  +    + + +R  L+E+
Subjt:  GMQLCLDASCKLVKIMRSCLKES

AT3G61620.2 3'-5'-exoribonuclease family protein5.9e-2130.04Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  I+
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTITGEWSTAKINE
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P   +V+ L +  +        
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTITGEWSTAKINE

Query:  GMQLCLDASCKLVKIMRSCLKES
           L  +    + + +R  L+E+
Subjt:  GMQLCLDASCKLVKIMRSCLKES

AT4G27490.1 3'-5'-exoribonuclease family protein1.4e-10773.54Show/hide
Query:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   A  TYSP + + ++R PIF+  D+DW RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS
        F++P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  +DGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISEE
         M+TCMPSRYE+TQLTITGEW+T  INE MQLCLDAS KL +IMR CLK+SA+ S+E
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAAAGCGACACCTGCTCCGACTACGTATTCTCCGTCTCTTACTATCCACAAAACCAGGCCACCCATCTTCAGAACCGATGACGTCGACTGGGTTCGCCCCGA
TGGCCGAGGCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATTGTTTCTG
TATTCGGACCTAGAGAGAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTCAGTTATACAACATTTTCTACTCCAGTTCGTGGACAGGGATCA
GAAAACAAGGAGTTCTCGTCAATGCTACATAAAGCTTTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACAACTGTGGATGTATTTGCCTTGGTGTTGGAATCTGG
AGGCAGTGATCTTCCTGTTGTAATATCATGCGCCAGTCTTGCTCTCGCCGATGCAGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGTAAGA
ATCTTCTTATTGATCCTATGTTGGAAGAGGAAAATCATCAAGATGGAAGTCTGATGATAACTTGTATGCCATCACGTTACGAAGTCACTCAGCTCACTATTACAGGCGAA
TGGTCAACCGCTAAAATTAATGAGGGTATGCAGCTTTGCCTTGATGCTTCATGTAAGCTTGTGAAGATCATGCGGTCATGCTTGAAGGAATCTGCCACCATTTCAGAGGA
ATGA
mRNA sequenceShow/hide mRNA sequence
GTTTTATGATATTTCAGAGAAAAAAAAAAGTCTTATGTAAGCCATTTGTGTATTTGTTTTCCATAAAAAACGACGAGAGGTTTAAATTATAGAAAAGTATAAAAATATAG
CTAAAGCTTCGCTACTAAAATAGCACTGGTCTCGCCTCTCCCGCTTCCAAGGTTCAGTTTCTCAATCTTTGATTCCTCGGCCTTCTCCACACAGAGAGACTGTTTTCAAT
CTCTTTGAAGAGACCATTCTGATCGTGGGTTTTTCTGTTCATTTATCCTGACGGCGGCAGGAAATTTGTGGCTCGACGGAGTCATTGGCGTTCTGAATGGCCAAAAAAGC
GACACCTGCTCCGACTACGTATTCTCCGTCTCTTACTATCCACAAAACCAGGCCACCCATCTTCAGAACCGATGACGTCGACTGGGTTCGCCCCGATGGCCGAGGCTTCC
ACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATTGTTTCTGTATTCGGACCTAGA
GAGAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTCAGTTATACAACATTTTCTACTCCAGTTCGTGGACAGGGATCAGAAAACAAGGAGTT
CTCGTCAATGCTACATAAAGCTTTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACAACTGTGGATGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGATCTTC
CTGTTGTAATATCATGCGCCAGTCTTGCTCTCGCCGATGCAGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGTAAGAATCTTCTTATTGAT
CCTATGTTGGAAGAGGAAAATCATCAAGATGGAAGTCTGATGATAACTTGTATGCCATCACGTTACGAAGTCACTCAGCTCACTATTACAGGCGAATGGTCAACCGCTAA
AATTAATGAGGGTATGCAGCTTTGCCTTGATGCTTCATGTAAGCTTGTGAAGATCATGCGGTCATGCTTGAAGGAATCTGCCACCATTTCAGAGGAATGAAAAAGAGTGA
ACCAGTTTGGTAGAACATTATACCTTTTTCTCTCCCTTGAATCATAAAAACAAATTATAG
Protein sequenceShow/hide protein sequence
MAKKATPAPTTYSPSLTIHKTRPPIFRTDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGS
ENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENHQDGSLMITCMPSRYEVTQLTITGE
WSTAKINEGMQLCLDASCKLVKIMRSCLKESATISEE