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Tan0000950 (gene) of Snake gourd v1 genome

Gene IDTan0000950
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationLG08:1811976..1812322
RNA-Seq ExpressionTan0000950
SyntenyTan0000950
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PQQ20230.1 pentatricopeptide repeat-containing protein [Prunus yedoensis var. nudiflora]7.7e-2983.54Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML DMI +LK+AGY+PEKSEVL D+DEEEKETALSLHSEKLAIAFGLIST PGT IR+VKNLRVC+DCHTATKIISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

XP_007203470.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Prunus persica]7.7e-2983.54Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML DMI +LK+AGY+PEKSEVL D+DEEEKETALSLHSEKLAIAFGLIST PGT IR+VKNLRVC+DCHTATKIISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

XP_021817716.1 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isoform X1 [Prunus avium]7.7e-2983.54Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML DMI +LK+AGY+PEKSEVL D+DEEEKETALSLHSEKLAIAFGLIST PGT IR+VKNLRVC+DCHTATKIISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

XP_024182101.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Rosa chinensis]1.8e-3084.81Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML+DMI +LK+AGY+P+KSEVLFDMDEEEKETALSLHSEKLAIAFGLIST PGTPIR+VKNLRVC+DCHTATK+ISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

XP_034225178.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Prunus dulcis]7.7e-2983.54Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML DMI +LK+AGY+PEKSEVL D+DEEEKETALSLHSEKLAIAFGLIST PGT IR+VKNLRVC+DCHTATKIISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

TrEMBL top hitse value%identityAlignment
A0A2P6RJ71 Putative tetratricopeptide-like helical domain, DYW domain-containing protein8.9e-3184.81Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML+DMI +LK+AGY+P+KSEVLFDMDEEEKETALSLHSEKLAIAFGLIST PGTPIR+VKNLRVC+DCHTATK+ISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

A0A314ZNK1 Pentatricopeptide repeat-containing protein3.7e-2983.54Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML DMI +LK+AGY+PEKSEVL D+DEEEKETALSLHSEKLAIAFGLIST PGT IR+VKNLRVC+DCHTATKIISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

A0A5E4GQU3 PREDICTED: pentatricopeptide3.7e-2983.54Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML DMI +LK+AGY+PEKSEVL D+DEEEKETALSLHSEKLAIAFGLIST PGT IR+VKNLRVC+DCHTATKIISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

A0A6P5SU63 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isoform X13.7e-2983.54Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML DMI +LK+AGY+PEKSEVL D+DEEEKETALSLHSEKLAIAFGLIST PGT IR+VKNLRVC+DCHTATKIISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

M5VTK1 DYW_deaminase domain-containing protein3.7e-2983.54Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML DMI +LK+AGY+PEKSEVL D+DEEEKETALSLHSEKLAIAFGLIST PGT IR+VKNLRVC+DCHTATKIISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

SwissProt top hitse value%identityAlignment
Q683I9 Pentatricopeptide repeat-containing protein At3g628901.3e-2362.03Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        MLD+++++L+EAGY+ +  EVL D++E++KE ALS HSEKLAIAF L+ T+PGTP+RI+KNLR+C DCH   K+ISKLF
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic4.3e-2265.82Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML++M   L++AG++P+ SEVL +M+EE KE AL  HSEKLAIAFGLISTKPGT + IVKNLRVC +CH ATK+ISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

Q9SMZ2 Pentatricopeptide repeat-containing protein At4g331703.3e-2263.16Show/hide
Query:  DMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        DMIR +K+ GY+PE    L D++EEEKE AL  HSEKLA+AFGL+ST P TPIR++KNLRVC DCH A K I+K++
Subjt:  DMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

Q9SUH6 Pentatricopeptide repeat-containing protein At4g307004.7e-2161.04Show/hide
Query:  LDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKL
        L+ +  K++EAGY PE    L D++EEE+E  + +HSE+LAIAFGLI+T+PGT IRI+KNLRVC DCHT TK+ISK+
Subjt:  LDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKL

Q9SZT8 Pentatricopeptide repeat-containing protein ELI1, chloroplastic2.8e-2158.97Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKL
        ML  +  ++K  GY+P  + VL D++E EKE +L +HSE+LAIA+GLISTKPG+P++I KNLRVC+DCHT TK+ISK+
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKL

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.0e-2365.82Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        ML++M   L++AG++P+ SEVL +M+EE KE AL  HSEKLAIAFGLISTKPGT + IVKNLRVC +CH ATK+ISK++
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein9.4e-2562.03Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        MLD+++++L+EAGY+ +  EVL D++E++KE ALS HSEKLAIAF L+ T+PGTP+RI+KNLR+C DCH   K+ISKLF
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein3.4e-2261.04Show/hide
Query:  LDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKL
        L+ +  K++EAGY PE    L D++EEE+E  + +HSE+LAIAFGLI+T+PGT IRI+KNLRVC DCHT TK+ISK+
Subjt:  LDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKL

AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-2363.16Show/hide
Query:  DMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF
        DMIR +K+ GY+PE    L D++EEEKE AL  HSEKLA+AFGL+ST P TPIR++KNLRVC DCH A K I+K++
Subjt:  DMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLF

AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-2258.97Show/hide
Query:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKL
        ML  +  ++K  GY+P  + VL D++E EKE +L +HSE+LAIA+GLISTKPG+P++I KNLRVC+DCHT TK+ISK+
Subjt:  MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGATGACATGATTCGTAAGTTGAAGGAAGCAGGCTACATTCCTGAGAAATCAGAAGTCCTGTTTGACATGGATGAAGAAGAAAAAGAGACTGCTCTTAGCCTTCA
CAGTGAAAAACTAGCTATTGCATTTGGACTTATTAGCACAAAACCTGGGACACCAATACGGATTGTGAAAAATCTTCGTGTTTGCACTGATTGCCACACTGCTACTAAGA
TCATCTCAAAGTTGTTCTTGTGGAGATTTCTGGTGATTATTCATAAATATCAACAGAAGTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGATGACATGATTCGTAAGTTGAAGGAAGCAGGCTACATTCCTGAGAAATCAGAAGTCCTGTTTGACATGGATGAAGAAGAAAAAGAGACTGCTCTTAGCCTTCA
CAGTGAAAAACTAGCTATTGCATTTGGACTTATTAGCACAAAACCTGGGACACCAATACGGATTGTGAAAAATCTTCGTGTTTGCACTGATTGCCACACTGCTACTAAGA
TCATCTCAAAGTTGTTCTTGTGGAGATTTCTGGTGATTATTCATAAATATCAACAGAAGTTCTAA
Protein sequenceShow/hide protein sequence
MLDDMIRKLKEAGYIPEKSEVLFDMDEEEKETALSLHSEKLAIAFGLISTKPGTPIRIVKNLRVCTDCHTATKIISKLFLWRFLVIIHKYQQKF