CuGenDBv2

Gene ID	Tan0001000
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA repair protein XRCC2 homolog isoform X2
Genome location	LG04:36120834..36135710
RNA-Seq Expression	Tan0001000
Synteny	Tan0001000
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0005657 - replication fork (cellular component) GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601640.1 DNA repair protein XRCC2-like protein, partial [Cucurbita argyrosperma subsp. sororia]

7.4e-27

85.33

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        KGFSLAN+LEAAVEE++KLLLVHPSIVIASK+TI GDRSSDIVRREKSL+E+E +H K DGGQVLYREYMPSAWQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

XP_022957215.1 DNA repair protein XRCC2 homolog isoform X1 [Cucurbita moschata]

7.4e-27

85.33

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        KGFSLAN+LEAAVEE++KLLLVHPSIVIASK+TI GDRSSDIVRREKSL+E+E +H K DGGQVLYREYMPSAWQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

XP_023550059.1 DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo]

1.1e-27

86.67

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        KGFSLAN+LEAAVEE++KLLLVHPSIVIASK+TI GDRSSDIVRREKSL+E+EL+H K DGGQVLYREYMPSAWQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

XP_023550217.1 DNA repair protein XRCC2 homolog isoform X2 [Cucurbita pepo subsp. pepo]

1.1e-27

86.67

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        KGFSLAN+LEAAVEE++KLLLVHPSIVIASK+TI GDRSSDIVRREKSL+E+EL+H K DGGQVLYREYMPSAWQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

XP_038891841.1 DNA repair protein XRCC2 homolog isoform X2 [Benincasa hispida]

7.4e-27

86.67

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        KGFSLANVLEAAVEE+RKLLLVHPSIVIASK+TI G+RSSDIVRRE+SL+ESE +H K DGGQVLYREYMPSAWQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMH0 RECA_2 domain-containing protein

8.8e-26

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        KGFSLANVLEAAVEE+RKLLLVHPSIVIASK+TI GDRSSD V+R+K+L+ESELKH K DGG  LYREYMPSAWQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

A0A6J1GYM0 DNA repair protein XRCC2 homolog isoform X2

3.6e-27

85.33

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        KGFSLAN+LEAAVEE++KLLLVHPSIVIASK+TI GDRSSDIVRREKSL+E+E +H K DGGQVLYREYMPSAWQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

A0A6J1GZX5 DNA repair protein XRCC2 homolog isoform X1

3.6e-27

85.33

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        KGFSLAN+LEAAVEE++KLLLVHPSIVIASK+TI GDRSSDIVRREKSL+E+E +H K DGGQVLYREYMPSAWQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

A0A6J1K7N3 DNA repair protein XRCC2 homolog isoform X2

2.3e-26

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        KGFSLAN+LEAAVEE++KLLLVHPSIVIASK+TI GDRSSDIVRREKS +E+E +H K DGGQVLYREYMPSAWQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

A0A6J1KC54 DNA repair protein XRCC2 homolog isoform X1

2.3e-26

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        KGFSLAN+LEAAVEE++KLLLVHPSIVIASK+TI GDRSSDIVRREKS +E+E +H K DGGQVLYREYMPSAWQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

SwissProt top hits

e value

%identity

Alignment

Q682D3 DNA repair protein XRCC2 homolog

3.4e-06

39.47

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDR-SSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        K  SL NV+E  V+EL+KLLLVH  +V+A+K TI  ++  ++   R+ S  +    +      Q  +RE+MPS+WQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDR-SSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

Arabidopsis top hits

e value

%identity

Alignment

AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2)

2.4e-07

39.47

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDR-SSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        K  SL NV+E  V+EL+KLLLVH  +V+A+K TI  ++  ++   R+ S  +    +      Q  +RE+MPS+WQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDR-SSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2)

2.4e-07

39.47

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDR-SSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ
        K  SL NV+E  V+EL+KLLLVH  +V+A+K TI  ++  ++   R+ S  +    +      Q  +RE+MPS+WQ
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDR-SSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQ

AT5G64520.3 homolog of X-ray repair cross complementing 2 (XRCC2)

2.5e-04

52.63

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Query:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDR
        K  SL NV+E  V+EL+KLLLVH  +V+A+K TI  ++
Subjt:  KGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDR

Sequences

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CDS sequence

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ATGAAAGGTTTTTCTCTTGCAAATGTGTTAGAAGCTGCAGTTGAAGAGCTTAGAAAGCTTTTGCTTGTGCATCCGAGCATTGTTATTGCTTCAAAATCAACCATTTTGGG
GGATAGATCTTCTGACATAGTTAGACGTGAAAAATCGTTAGCAGAGTCGGAACTAAAACATGCGAAAGTCGATGGTGGACAAGTTCTGTACCGTGAGTATATGCCTTCTG
CATGGCAGGTAATCTATGTAATTTTCCTTGACTATATTTTGTTTTGCGAAAGTTATAACTTATGTATTTAG

mRNA sequence

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ACTCGAGGACGAGTAATGAGCTAAGTTTGGGGGCGTGATAATCCCATGAAATGGGATTATTTTGGCATTTTCCGTTGCTTATTTTCACTCGAAGTTGAGTCGTGTGCGTG
TTTTGGTTGTCTTTAGTGTGTTGTTGGTTGAGTTTAGGTAGAAGTGAGACTAGTGTTTAATTCTTTGCTTGGTTGTTGAGTTTCCTTTTTTTTTCTAGCTTATTTGTGTA
TTTTTGTGTGCCTTTTCCTTGCAGCCATTTAAGAGAAGCAGGCCTGCTGTCATGCTAATGTTGTAGCATTGCGTAGCAGTGGTGTAAAAAGCAGAGGAAGATTGTTTAAT
GTGGCGGTGATGCTGTAGCATTGCGCAACATTGACTTCGGGACAGATTAGTCAAATGGGACCTGCAAGTGATGAAAGGTTTTTCTCTTGCAAATGTGTTAGAAGCTGCAG
TTGAAGAGCTTAGAAAGCTTTTGCTTGTGCATCCGAGCATTGTTATTGCTTCAAAATCAACCATTTTGGGGGATAGATCTTCTGACATAGTTAGACGTGAAAAATCGTTA
GCAGAGTCGGAACTAAAACATGCGAAAGTCGATGGTGGACAAGTTCTGTACCGTGAGTATATGCCTTCTGCATGGCAGGTAATCTATGTAATTTTCCTTGACTATATTTT
GTTTTGCGAAAGTTATAACTTATGTATTTAGAAGTGTTGTCAAAGTGCATGTTACACTTAAAGATAAGAAGTCTCTCGACCACGTTAAGAAATGAGGTGACTTAAAAGTA
TTGCCTGAATGAGGGAGACATTTAAAAAGTTAACATCATAGCAATAATTTATAAAGACAACATAGCCATGAAATATATGAACATAAAGCATATCGTTTGGAGTAGGGGGA
TAACTTTTTTCTTAGACTTTGCTTAGTCTGAAAGTATTTTTATGAGGTAGCAGAACGCTCTCGAATATTTTTTTTTATTATTATTTTTTGAGTTCAACAATACGTGGGGT
GATGAGATTCGAACCTTTAGCCTCTTGATTAAAGATATATACCTAAATCAATTGAACTATGTTTAGGTTGGTAGCTCTCGAATCATCGCAATTTCCACTACTTCTATCAC
AGTTGATTAGATCTATAAGTTCCCCGAAAACATTTGGTCATTAGCAAATATGAGAAGATAGAATAAGACACCAGAAGCTACGGTTTTTGCCATCATTATCTTCTTCTGAA
ATTGATGCATCATTGAGTGATTTTCTTGGGACATCGTCCTCGCGATATCCAAGGCCCAGTTTCTCTCCCACAGTCCCACTATCATCATCATTACTGTCTTCTATGTTTTT
TGGAATCCAACATTATAGGCG

Protein sequence

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MKGFSLANVLEAAVEELRKLLLVHPSIVIASKSTILGDRSSDIVRREKSLAESELKHAKVDGGQVLYREYMPSAWQVIYVIFLDYILFCESYNLCI

Tan0001000 (gene) of Snake gourd v1 genome