; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001010 (gene) of Snake gourd v1 genome

Gene IDTan0001010
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L18
Genome locationLG05:1673268..1673654
RNA-Seq ExpressionTan0001010
SyntenyTan0001010
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140774.1 uncharacterized protein LOC111011356 [Momordica charantia]3.7e-5893.75Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKG KN TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ
        AIVNSL+NGGVKLILD+NVD A RP YQ
Subjt:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ

XP_022943852.1 uncharacterized protein LOC111448460 [Cucurbita moschata]2.0e-5994.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ
        AIVNSLKN GVKLILDNN DDA RPSY+
Subjt:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ

XP_022985582.1 uncharacterized protein LOC111483610 [Cucurbita maxima]2.6e-5994.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ
        AIVNSLKN GVKLILDNN DDA RPSY+
Subjt:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ

XP_023511782.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]1.5e-5995.31Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+DVNKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ
        AIVNSLKN GVKLILDNN DDA RPSY+
Subjt:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]1.2e-5996.09Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DVNKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ
        AIVN+LKN GVKLILDNNVDDA R SYQ
Subjt:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ

TrEMBL top hitse value%identityAlignment
A0A5D3C2Z2 50S ribosomal protein L189.9e-5790.7Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH D+NKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNV-DDAPRPSYQ
        AIVNSLKN GVKLILDNNV DDA + +YQ
Subjt:  AIVNSLKNGGVKLILDNNV-DDAPRPSYQ

A0A6J1CGQ4 uncharacterized protein LOC1110113561.8e-5893.75Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKG KN TKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ
        AIVNSL+NGGVKLILD+NVD A RP YQ
Subjt:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ

A0A6J1FXG0 uncharacterized protein LOC1114484609.5e-6094.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ
        AIVNSLKN GVKLILDNN DDA RPSY+
Subjt:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ

A0A6J1JBQ5 uncharacterized protein LOC1114836101.2e-5994.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ
        AIVNSLKN GVKLILDNN DDA RPSY+
Subjt:  AIVNSLKNGGVKLILDNNVDDAPRPSYQ

A0A6P3ZI60 uncharacterized protein LOC1074114743.7e-5690.55Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR VAT+STVEHSIKGSLECGRSCNAKAA+VVGEVLAMRLKV+GLEQGQGRGIHVDVNKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNVDDAPRPSY
        AIVNSLKN GVKLILD+N +++ RPSY
Subjt:  AIVNSLKNGGVKLILDNNVDDAPRPSY

SwissProt top hitse value%identityAlignment
A9M3V0 50S ribosomal protein L183.2e-0428.7Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIV

Query:  NSLKNGGV
         + +  G+
Subjt:  NSLKNGGV

Q5F5U3 50S ribosomal protein L183.2e-0428.7Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIV

Query:  NSLKNGGV
         + +  G+
Subjt:  NSLKNGGV

Q5P316 50S ribosomal protein L182.9e-0531.19Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIV
        LK   L +F +  +I A V+D +  R++A ASTVE  ++  L  G   N +AA VVG+++A R K  G+E               ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIV

Query:  NSLKNGGVK
         + + GG+K
Subjt:  NSLKNGGVK

Q7DDT0 50S ribosomal protein L183.2e-0428.7Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIV

Query:  NSLKNGGV
         + +  G+
Subjt:  NSLKNGGV

Q9JQQ6 50S ribosomal protein L183.2e-0428.7Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIV

Query:  NSLKNGGV
         + +  G+
Subjt:  NSLKNGGV

Arabidopsis top hitse value%identityAlignment
AT3G45020.1 Ribosomal L18p/L5e family protein1.9e-5281.82Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW
        MTVLKRYVLRLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VGEVLAMRLKV+GL+ GQGRGIH DV KEIEKKGFK+RTK+W
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIW

Query:  AIVNSLKNGGVKLILDNNVDD
        A++NSL+N GV LILD++ DD
Subjt:  AIVNSLKNGGVKLILDNNVDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGTCGGATTGTGGCAACTGCATCCACAGT
TGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAGTAGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAAC
AGGGGCAAGGAAGAGGGATTCACGTGGACGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACCAAAATCTGGGCTATTGTCAACTCACTCAAGAATGGCGGA
GTTAAACTTATTCTCGACAACAATGTTGATGATGCACCTAGGCCAAGTTACCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGTCGGATTGTGGCAACTGCATCCACAGT
TGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAGTAGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAAC
AGGGGCAAGGAAGAGGGATTCACGTGGACGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACCAAAATCTGGGCTATTGTCAACTCACTCAAGAATGGCGGA
GTTAAACTTATTCTCGACAACAATGTTGATGATGCACCTAGGCCAAGTTACCAATAA
Protein sequenceShow/hide protein sequence
MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGG
VKLILDNNVDDAPRPSYQ