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Tan0001083 (gene) of Snake gourd v1 genome

Gene IDTan0001083
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTranscription initiation factor IIE subunit alpha
Genome locationLG09:70427713..70430273
RNA-Seq ExpressionTan0001083
SyntenyTan0001083
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3784390.1 General transcription factor IIE subunit 1 [Nymphaea thermarum]6.2e-0466.67Show/hide
Query:  TKGDNQPKNGRSNNRGIAVVVLDALTRVDLNVEATASVEDEE
        TKGDNQPK GRS+NRGIAVVVLDALTR    V+    V++E+
Subjt:  TKGDNQPKNGRSNNRGIAVVVLDALTRVDLNVEATASVEDEE
KAF4373275.1 hypothetical protein G4B88_007288 [Cannabis sativa]2.8e-0496.3Show/hide
Query:  TKGDNQPKNGRSNNRGIAVVVLDALTR
        TKGDNQPKNGRS+NRGIAVVVLDALTR
Subjt:  TKGDNQPKNGRSNNRGIAVVVLDALTR
PON62082.1 TFIIE transcription factor [Parasponia andersonii]2.8e-0496.3Show/hide
Query:  TKGDNQPKNGRSNNRGIAVVVLDALTR
        TKGDNQPKNGRS+NRGIAVVVLDALTR
Subjt:  TKGDNQPKNGRSNNRGIAVVVLDALTR
PON86525.1 TFIIE transcription factor [Trema orientale]2.8e-0496.3Show/hide
Query:  TKGDNQPKNGRSNNRGIAVVVLDALTR
        TKGDNQPKNGRS+NRGIAVVVLDALTR
Subjt:  TKGDNQPKNGRSNNRGIAVVVLDALTR
XP_030482672.1 transcription initiation factor IIE subunit alpha isoform X1 [Cannabis sativa]2.8e-0496.3Show/hide
Query:  TKGDNQPKNGRSNNRGIAVVVLDALTR
        TKGDNQPKNGRS+NRGIAVVVLDALTR
Subjt:  TKGDNQPKNGRSNNRGIAVVVLDALTR
TrEMBL top hitse value%identityAlignment
A0A2P5CM19 Transcription initiation factor IIE subunit alpha1.4e-0496.3Show/hide
Query:  TKGDNQPKNGRSNNRGIAVVVLDALTR
        TKGDNQPKNGRS+NRGIAVVVLDALTR
Subjt:  TKGDNQPKNGRSNNRGIAVVVLDALTR
A0A2P5EM30 Transcription initiation factor IIE subunit alpha1.4e-0496.3Show/hide
Query:  TKGDNQPKNGRSNNRGIAVVVLDALTR
        TKGDNQPKNGRS+NRGIAVVVLDALTR
Subjt:  TKGDNQPKNGRSNNRGIAVVVLDALTR
A0A5C7IFG4 Transcription initiation factor IIE subunit alpha3.9e-0489.29Show/hide
Query:  MTKGDNQPKNGRSNNRGIAVVVLDALTR
        +TKGDNQPK GRS+NRGIAVVVLDALTR
Subjt:  MTKGDNQPKNGRSNNRGIAVVVLDALTR
A0A7J6FRI8 Transcription initiation factor IIE subunit alpha1.4e-0496.3Show/hide
Query:  TKGDNQPKNGRSNNRGIAVVVLDALTR
        TKGDNQPKNGRS+NRGIAVVVLDALTR
Subjt:  TKGDNQPKNGRSNNRGIAVVVLDALTR
A0A7J6GTY9 Transcription initiation factor IIE subunit alpha1.4e-0496.3Show/hide
Query:  TKGDNQPKNGRSNNRGIAVVVLDALTR
        TKGDNQPKNGRS+NRGIAVVVLDALTR
Subjt:  TKGDNQPKNGRSNNRGIAVVVLDALTR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G03280.1 Transcription factor TFIIE, alpha subunit2.3e-0474.07Show/hide
Query:  TKGDNQPKNGRSNNRGIAVVVLDALTR
        TK DNQ K+ RS+NRGIA VVLDAL R
Subjt:  TKGDNQPKNGRSNNRGIAVVVLDALTR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGGTTGACTTGAACGTTGAAGCAACAGC
TTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGGTTGACTTGAACGTTGAAGCAACAGC
TTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA
Protein sequenceShow/hide protein sequence
MTKGDNQPKNGRSNNRGIAVVVLDALTRVDLNVEATASVEDEEEDDVNWEEG