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Tan0001092 (gene) of Snake gourd v1 genome

Gene IDTan0001092
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG02:59254874..59269073
RNA-Seq ExpressionTan0001092
SyntenyTan0001092
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037805.1 uncharacterized protein E6C27_scaffold918G00190 [Cucumis melo var. makuwa]2.8e-0770.45Show/hide
Query:  VVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR
        VVE +RG S  S F GREQRRFTPG+N+ SRQDFK+R+GGQ SR
Subjt:  VVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR

KAA0041108.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-0756.14Show/hide
Query:  SFSQESIMRGTNKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR
        +F  E  +      VE +RG S  S F GREQRRFTPG+N+ SRQDFK+R+GGQ SR
Subjt:  SFSQESIMRGTNKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR

KAA0041710.1 putative retroelement [Cucumis melo var. makuwa]3.7e-0767.39Show/hide
Query:  NKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR
        N  VE +RG S  S F GREQRRFTPG+N+ SRQDFK+R GGQ SR
Subjt:  NKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR

KAA0042138.1 uncharacterized protein E6C27_scaffold67G006260 [Cucumis melo var. makuwa]9.6e-0856.14Show/hide
Query:  SFSQESIMRGTNKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR
        +F  E  +R     VE +RG S  S F GREQR+FTPG+N+ SRQDFK+R+GGQ SR
Subjt:  SFSQESIMRGTNKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR

KAA0054814.1 reverse transcriptase [Cucumis melo var. makuwa]4.8e-0772.09Show/hide
Query:  VEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR
        VE +RG S TS F GREQRRFTPG+N+ SRQDFK+R GGQ SR
Subjt:  VEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR

TrEMBL top hitse value%identityAlignment
A0A5A7SX06 DNA/RNA polymerases superfamily protein2.3e-0769.77Show/hide
Query:  VEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR
        VE +RG S T+ F GREQRRFTPG+N+ SRQDFK+R+GGQ SR
Subjt:  VEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR

A0A5A7T8K4 Retrotrans_gag domain-containing protein1.4e-0770.45Show/hide
Query:  VVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR
        VVE +RG S  S F GREQRRFTPG+N+ SRQDFK+R+GGQ SR
Subjt:  VVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR

A0A5A7TDR2 Reverse transcriptase1.8e-0756.14Show/hide
Query:  SFSQESIMRGTNKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR
        +F  E  +      VE +RG S  S F GREQRRFTPG+N+ SRQDFK+R+GGQ SR
Subjt:  SFSQESIMRGTNKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR

A0A5A7TEI1 Putative retroelement1.8e-0767.39Show/hide
Query:  NKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR
        N  VE +RG S  S F GREQRRFTPG+N+ SRQDFK+R GGQ SR
Subjt:  NKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR

A0A5A7TH36 CCHC-type domain-containing protein4.7e-0856.14Show/hide
Query:  SFSQESIMRGTNKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR
        +F  E  +R     VE +RG S  S F GREQR+FTPG+N+ SRQDFK+R+GGQ SR
Subjt:  SFSQESIMRGTNKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDFKSRAGGQTSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCTAAGAGACCCTATCCATTTATGGAGATTGAGTTGTTCCGAATCCCATGTTACATCCCTCCGAATGGATGGTGCTACTTCGGGCAACCTGCAGGGCGGGATGCA
GGATCCTACCCAAGGCCAATCTGAGAGAGGATCTAGTGCCCCGAGAGTCCAAACTGAAGCTACAGATGAGCAACATGTTAGTTTTTCACAGGAAAGTATAATGAGAGGCA
CAAACAAAGTGGTGGAGCCTACTCGAGGGCCTTCACCGACCAGCAGTTTCCATGGTCGTGAGCAGCGACGATTCACACCTGGAGTGAATGTTTTGAGTCGTCAGGACTTT
AAAAGTCGAGCTGGCGGCCAGACATCGAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACCTAAGAGACCCTATCCATTTATGGAGATTGAGTTGTTCCGAATCCCATGTTACATCCCTCCGAATGGATGGTGCTACTTCGGGCAACCTGCAGGGCGGGATGCA
GGATCCTACCCAAGGCCAATCTGAGAGAGGATCTAGTGCCCCGAGAGTCCAAACTGAAGCTACAGATGAGCAACATGTTAGTTTTTCACAGGAAAGTATAATGAGAGGCA
CAAACAAAGTGGTGGAGCCTACTCGAGGGCCTTCACCGACCAGCAGTTTCCATGGTCGTGAGCAGCGACGATTCACACCTGGAGTGAATGTTTTGAGTCGTCAGGACTTT
AAAAGTCGAGCTGGCGGCCAGACATCGAGGTAA
Protein sequenceShow/hide protein sequence
MDLRDPIHLWRLSCSESHVTSLRMDGATSGNLQGGMQDPTQGQSERGSSAPRVQTEATDEQHVSFSQESIMRGTNKVVEPTRGPSPTSSFHGREQRRFTPGVNVLSRQDF
KSRAGGQTSR