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Tan0001107 (gene) of Snake gourd v1 genome

Gene IDTan0001107
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationLG05:72422220..72422576
RNA-Seq ExpressionTan0001107
SyntenyTan0001107
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034014.1 uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]8.8e-1442.02Show/hide
Query:  MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTP-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSN
        MN MFSIA+  P++VHLY+ V  ++  +         +V+P       + +D +P+    P C +E+MV  N Y +F TETDDEFEE+DF+   +++PSN
Subjt:  MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTP-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSN

Query:  TFNELDNNVLDNTIEHDPI
        TF +LD N +D   EHDPI
Subjt:  TFNELDNNVLDNTIEHDPI

KAA0036768.1 uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]1.2e-1343.44Show/hide
Query:  MNLMFSIAMSIPDLVHLYINV----RRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDI
        MN MFSIA+S P++VHLY+ V      +N+NV+         V+P          + D  +V   C +E+MV  N Y +F TETDDEFEE+DF+   +++
Subjt:  MNLMFSIAMSIPDLVHLYINV----RRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDI

Query:  PSNTFNELDNNVLDNTIEHDPI
        PSNTF +LD N +D   EHDPI
Subjt:  PSNTFNELDNNVLDNTIEHDPI

KAA0040603.1 uncharacterized protein E6C27_scaffold262G001800 [Cucumis melo var. makuwa]6.8e-1444.14Show/hide
Query:  MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQI-VGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNN
        M IP++VHLY+NV R+ +++    E P   ++       +Q + PD +I V +  DDE++VTNN Y  F TETDDEFEE DF+   H++PSNT  ++D +
Subjt:  MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQI-VGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNN

Query:  VLDNTIEHDPI
        V+D+  EH+PI
Subjt:  VLDNTIEHDPI

KAA0060519.1 uncharacterized protein E6C27_scaffold22G003730 [Cucumis melo var. makuwa]1.0e-1445.05Show/hide
Query:  MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPC-DDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNN
        M IP++VHLY+NV RM +++    E P   ++     + +Q + PD +IV +   DDE+MV NN Y  F TETDDEFEE DF+   H++PSNT  +++ +
Subjt:  MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPC-DDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNN

Query:  VLDNTIEHDPI
        V+D+  EHDPI
Subjt:  VLDNTIEHDPI

TYJ95836.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]1.2e-1342.02Show/hide
Query:  MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTP-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSN
        MN MFSIA+  P++VHLY+ V  ++  +         +V+P       + +D +P+    P C +E+MV  N Y +F TETDDEFEE+DF+   +++PSN
Subjt:  MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTP-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSN

Query:  TFNELDNNVLDNTIEHDPI
        TF +LD N +D   EHDPI
Subjt:  TFNELDNNVLDNTIEHDPI

TrEMBL top hitse value%identityAlignment
A0A5A7SS31 DBD_Tnp_Mut domain-containing protein4.3e-1442.02Show/hide
Query:  MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTP-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSN
        MN MFSIA+  P++VHLY+ V  ++  +         +V+P       + +D +P+    P C +E+MV  N Y +F TETDDEFEE+DF+   +++PSN
Subjt:  MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTP-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSN

Query:  TFNELDNNVLDNTIEHDPI
        TF +LD N +D   EHDPI
Subjt:  TFNELDNNVLDNTIEHDPI

A0A5A7T1X8 SWIM-type domain-containing protein5.6e-1443.44Show/hide
Query:  MNLMFSIAMSIPDLVHLYINV----RRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDI
        MN MFSIA+S P++VHLY+ V      +N+NV+         V+P          + D  +V   C +E+MV  N Y +F TETDDEFEE+DF+   +++
Subjt:  MNLMFSIAMSIPDLVHLYINV----RRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDI

Query:  PSNTFNELDNNVLDNTIEHDPI
        PSNTF +LD N +D   EHDPI
Subjt:  PSNTFNELDNNVLDNTIEHDPI

A0A5A7V456 Uncharacterized protein5.0e-1545.05Show/hide
Query:  MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPC-DDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNN
        M IP++VHLY+NV RM +++    E P   ++     + +Q + PD +IV +   DDE+MV NN Y  F TETDDEFEE DF+   H++PSNT  +++ +
Subjt:  MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPC-DDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNN

Query:  VLDNTIEHDPI
        V+D+  EHDPI
Subjt:  VLDNTIEHDPI

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein5.6e-1442.02Show/hide
Query:  MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTP-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSN
        MN MFSIA+  P++VHLY+ V  ++  +         +V+P       + +D +P+    P C +E+MV  N Y +F TETDDEFEE+DF+   +++PSN
Subjt:  MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTP-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSN

Query:  TFNELDNNVLDNTIEHDPI
        TF +LD N +D   EHDPI
Subjt:  TFNELDNNVLDNTIEHDPI

A0A5D3C2N3 Uncharacterized protein3.3e-1444.14Show/hide
Query:  MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQI-VGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNN
        M IP++VHLY+NV R+ +++    E P   ++       +Q + PD +I V +  DDE++VTNN Y  F TETDDEFEE DF+   H++PSNT  ++D +
Subjt:  MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQI-VGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNN

Query:  VLDNTIEHDPI
        V+D+  EH+PI
Subjt:  VLDNTIEHDPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAGATTTAGTACATTTATATATCAATGTAAGAAGGATGAATGTGAATGTACAAACCTTTGAAGAAACGCCTATTCA
ATCTGTTGATCCTAGCCTAGGTGTTGAATCAAGCCAATGTCTTGACCCAGATCCTCAAATAGTTGGTACACCGTGTGATGATGAAGATATGGTTACAAATAATACATATA
AAAAGTTTATAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTACATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGAT
AACACTATCGAACATGATCCTATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAGATTTAGTACATTTATATATCAATGTAAGAAGGATGAATGTGAATGTACAAACCTTTGAAGAAACGCCTATTCA
ATCTGTTGATCCTAGCCTAGGTGTTGAATCAAGCCAATGTCTTGACCCAGATCCTCAAATAGTTGGTACACCGTGTGATGATGAAGATATGGTTACAAATAATACATATA
AAAAGTTTATAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTACATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGAT
AACACTATCGAACATGATCCTATCTAA
Protein sequenceShow/hide protein sequence
MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLD
NTIEHDPI