; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001149 (gene) of Snake gourd v1 genome

Gene IDTan0001149
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationLG08:24917480..24918560
RNA-Seq ExpressionTan0001149
SyntenyTan0001149
Gene Ontology termsNA
InterPro domainsIPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028383.1 Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-3468.18Show/hide
Query:  MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREK
        M MP+   + LLFLST LHACDAR  +L   SR+E   IS GF+ NQ E+SLD+++S+ VSSME  VGI ILKGMKK RRL MELPV+D D+DKD D  K
Subjt:  MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREK

Query:  VVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP
        VVN E+NEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP

XP_023005579.1 uncharacterized protein LOC111498521 [Cucurbita maxima]9.8e-3868.94Show/hide
Query:  MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREK
        M MP+   + LLFLST LHACDAR  +L   SR+E   IS GF+M+Q +RSLDK+KS++VSS+E  VGI ILKGMKK RRL MELPV+D+D+DKD+D +K
Subjt:  MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREK

Query:  VVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP
        VVN E+NEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  VVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]8.3e-3770.45Show/hide
Query:  MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREK
        M MP+ F + LLFLST LHACDAR  +L   SR+E   IS GF+ NQ ERSLD++KS+ VSSME  VGI ILKGMKK RRL MELPV+D+D+DKD D  K
Subjt:  MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREK

Query:  VVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP
        VVN E+NEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]4.1e-2862.5Show/hide
Query:  MPSLFLIILLFLSTLLHACDARHHRLFEG----SRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILK-GMKKH-RRLVMELPVKDKDKDKDR
        MP LFLI+L+F ST LHAC+AR  R FE     SRIE   ISQG   +Q ERS +++ SDK+S  EIIVGI +LK GMKKH  RLVME P+K        
Subjt:  MPSLFLIILLFLSTLLHACDARHHRLFEG----SRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILK-GMKKH-RRLVMELPVKDKDKDKDR

Query:  DREKVVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP
          EKV+N ++NEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  DREKVVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]1.7e-2962.96Show/hide
Query:  MPSLFLIILLFLSTLLHACDARHHRLFEG----SRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKH-RRLVMELPVKDKDKDKDRD
        MP LFLI+L+F ST LHAC+AR  R FE     SRIE   ISQG   +Q ERS +++ SDK+S  EIIVGI +LKGMKKH  RLVME P+K         
Subjt:  MPSLFLIILLFLSTLLHACDARHHRLFEG----SRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKH-RRLVMELPVKDKDKDKDRD

Query:  REKVVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP
         EKV+N ++NEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  REKVVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein1.9e-2354.61Show/hide
Query:  MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRI-----ELSPISQGFQM--NQRERSLDKNKSDKV-SSMEIIVGIGILKGMKKH-RRLVMELPVKDKD
        MAMP  FLI+L F ST LHACDA   R F+ S       EL  +SQG     + +E S DKN +D +  + E I+GI +LKGMK+   RLVME P+K   
Subjt:  MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRI-----ELSPISQGFQM--NQRERSLDKNKSDKV-SSMEIIVGIGILKGMKKH-RRLVMELPVKDKD

Query:  KDKDRDREKVVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP
               EKV+N ++NEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  KDKDRDREKVVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP

A0A2J6MHI4 Uncharacterized protein8.2e-0635.04Show/hide
Query:  LHACDARHHRLFE---GSRI--------ELSPISQGFQMNQ---------RERSLDKNKSDKVSSMEIIVGIGILK--GMKKHRRLVMELPVKDKDKDKD
        +HACD+RH  +F    G  +        E+   ++G   N+          E   ++ K  K + +E+ V     K  G K H RL ME   KD      
Subjt:  LHACDARHHRLFE---GSRI--------ELSPISQGFQMNQ---------RERSLDKNKSDKVSSMEIIVGIGILK--GMKKHRRLVMELPVKDKDKDKD

Query:  RDREKVVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP
          +EK+ N + + V ED+ VMDYAQPHRKPPIHN +P
Subjt:  RDREKVVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP

A0A438K320 Uncharacterized protein2.5e-0735.43Show/hide
Query:  LIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQR--ERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREKVVNFE
        L++LL LS  +HAC+ARH  +      E+  +S+  +   +  + SL       + + E +    IL G K+H RL++             D E+ V+ +
Subjt:  LIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQR--ERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREKVVNFE

Query:  KNEVGEDMVVMDYAQPHRKPPIHNEKP
        + ++ ED+VVMDYAQPHRKPPIHN+ P
Subjt:  KNEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1DKL1 uncharacterized protein LOC1110213961.1e-2657.97Show/hide
Query:  MAMPSLFLIILLFLSTLLHACDARHH-RLFEGSRIE-----LSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDK
        MA PSL  I+LL   + LHACDA H  +LFE S        L+PI Q F+ +Q ERSL+KN   KVSS  + +GIGILKGMKKH+RL ME  +K+K    
Subjt:  MAMPSLFLIILLFLSTLLHACDARHH-RLFEGSRIE-----LSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDK

Query:  DRDREKVVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP
            EK++++E+NEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  DRDREKVVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1KZM9 uncharacterized protein LOC1114985214.7e-3868.94Show/hide
Query:  MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREK
        M MP+   + LLFLST LHACDAR  +L   SR+E   IS GF+M+Q +RSLDK+KS++VSS+E  VGI ILKGMKK RRL MELPV+D+D+DKD+D +K
Subjt:  MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREK

Query:  VVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP
        VVN E+NEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  VVNFEKNEVGEDMVVMDYAQPHRKPPIHNEKP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 16.7e-0583.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).4.7e-0683.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGCCTTCTTTGTTTCTCATAATTCTCCTATTCTTGTCAACTCTTTTGCATGCATGTGATGCTCGCCATCATCGATTATTCGAGGGTTCGAGAATTGAACTGAG
TCCAATCTCTCAAGGGTTTCAGATGAATCAACGCGAGAGAAGTTTGGACAAAAACAAAAGTGACAAGGTTTCTTCTATGGAGATCATTGTTGGGATTGGAATACTAAAGG
GAATGAAGAAGCACAGAAGGTTGGTAATGGAGCTTCCAGTGAAAGACAAAGACAAAGACAAAGACAGAGACAGAGAAAAAGTGGTGAACTTTGAGAAAAATGAGGTTGGA
GAAGATATGGTAGTGATGGATTATGCACAACCCCATAGGAAACCTCCTATTCACAATGAAAAACCCTAG
mRNA sequenceShow/hide mRNA sequence
CTTCAACAAACATTTTTCCATCCCCATTTAATGCTTCCTCTTTCTCTTTTTCTTTCCCTTCCCTTCCATTACAAATACTTCCATAACCCTAATTTCCTACTCCCATTCCA
AACATAACCCTCCATCTTCATTTCCATGGCCATGCCTTCTTTGTTTCTCATAATTCTCCTATTCTTGTCAACTCTTTTGCATGCATGTGATGCTCGCCATCATCGATTAT
TCGAGGGTTCGAGAATTGAACTGAGTCCAATCTCTCAAGGGTTTCAGATGAATCAACGCGAGAGAAGTTTGGACAAAAACAAAAGTGACAAGGTTTCTTCTATGGAGATC
ATTGTTGGGATTGGAATACTAAAGGGAATGAAGAAGCACAGAAGGTTGGTAATGGAGCTTCCAGTGAAAGACAAAGACAAAGACAAAGACAGAGACAGAGAAAAAGTGGT
GAACTTTGAGAAAAATGAGGTTGGAGAAGATATGGTAGTGATGGATTATGCACAACCCCATAGGAAACCTCCTATTCACAATGAAAAACCCTAG
Protein sequenceShow/hide protein sequence
MAMPSLFLIILLFLSTLLHACDARHHRLFEGSRIELSPISQGFQMNQRERSLDKNKSDKVSSMEIIVGIGILKGMKKHRRLVMELPVKDKDKDKDRDREKVVNFEKNEVG
EDMVVMDYAQPHRKPPIHNEKP