CuGenDBv2

Gene ID	Tan0001209
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG05:44782989..44783535
RNA-Seq Expression	Tan0001209
Synteny	Tan0001209
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035676.1 gag/pol protein [Cucumis melo var. makuwa]

1.5e-34

70.19

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Query:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG
        M+SSI+ LL +KKL G+N  TWK+ LNTILVVDDL+F+LTEECP+ P SNA+R  R+AYDRWIKAN+KA+VY+LASMSD+L KKHE + T KEI+DS+KG
Subjt:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG

Query:  MFGQ
        MFGQ
Subjt:  MFGQ

XP_022143540.1 uncharacterized protein LOC111013417 [Momordica charantia]

3.9e-35

69.23

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Query:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG
        M+SSI+ L  ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P +NA+RNVR+A+DRW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K 
Subjt:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG

Query:  MFGQ
        MFG+
Subjt:  MFGQ

XP_022157095.1 uncharacterized protein LOC111023904 [Momordica charantia]

3.0e-35

70.19

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Query:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG
        M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P  NA+RNVR+A+DRW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K 
Subjt:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG

Query:  MFGQ
        MFG+
Subjt:  MFGQ

XP_022157632.1 uncharacterized protein LOC111024294 [Momordica charantia]

2.3e-35

70.19

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Query:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG
        M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P  NA+RNVR+A+DRW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K 
Subjt:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG

Query:  MFGQ
        MFG+
Subjt:  MFGQ

XP_022157844.1 uncharacterized protein LOC111024457 [Momordica charantia]

1.3e-35

70.19

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Query:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG
        M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P +NA+RNVR+A+DRW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K 
Subjt:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG

Query:  MFGQ
        MFG+
Subjt:  MFGQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0E9 Gag/pol protein

7.2e-35

70.19

Show/hide

Query:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG
        M+SSI+ LL +KKL G+N  TWK+ LNTILVVDDL+F+LTEECP+ P SNA+R  R+AYDRWIKAN+KA+VY+LASMSD+L KKHE + T KEI+DS+KG
Subjt:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG

Query:  MFGQ
        MFGQ
Subjt:  MFGQ

A0A6J1CP29 uncharacterized protein LOC111013417

1.9e-35

69.23

Show/hide

Query:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG
        M+SSI+ L  ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P +NA+RNVR+A+DRW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K 
Subjt:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG

Query:  MFGQ
        MFG+
Subjt:  MFGQ

A0A6J1DS54 uncharacterized protein LOC111023904

1.4e-35

70.19

Show/hide

Query:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG
        M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P  NA+RNVR+A+DRW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K 
Subjt:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG

Query:  MFGQ
        MFG+
Subjt:  MFGQ

A0A6J1DUZ9 uncharacterized protein LOC111024294

1.1e-35

70.19

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Query:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG
        M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P  NA+RNVR+A+DRW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K 
Subjt:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG

Query:  MFGQ
        MFG+
Subjt:  MFGQ

A0A6J1DXQ5 uncharacterized protein LOC111024457

6.5e-36

70.19

Show/hide

Query:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG
        M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P +NA+RNVR+A+DRW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K 
Subjt:  MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKG

Query:  MFGQ
        MFG+
Subjt:  MFGQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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mRNA sequence

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ATGTCTAGCTCTATAATTTCCTTATTGGGTGCGAAAAAGTTAACCGGAGAGAATATGATGACATGGAAAAACAAACTCAACACTATATTGGTAGTGGACGATTTGAAGTT
TGTGCTAACTGAGGAGTGTCCTCGGGTGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGC
TGGCAAGTATGTCTGACATGTTAGGCAAGAAGCATGAGGGCATGATTACCGCTAAGGAAATCATGGATTCTGTGAAGGGTATGTTTGGACAACAGCCACACAAGCCCGAC
ATAATGCCCTAAAGTACATATTCAACTCGAGGATGCCAGAGGGTACATCTGTGCGGGATCATGTCCTAGATATGATGGTGCACTTTAACATCGCGGAGTCGAATGGTGCT
TCCATCGATGAGTCGAGCAGTCGACTTCATTCTCGAAACCCTTCCGAGATAGTTTCTGCAGATTTAGAAGTAATCTTTGTTATGAACGAGCTTACTTTTAATCTTAC

Protein sequence

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MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQQPHKPD
IMP

Tan0001209 (gene) of Snake gourd v1 genome