; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001229 (gene) of Snake gourd v1 genome

Gene IDTan0001229
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG01:109342859..109343380
RNA-Seq ExpressionTan0001229
SyntenyTan0001229
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]6.5e-4061.96Show/hide
Query:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQP-----------------------------
        MSVMM DV  +  MAEMERKI+L MK V+ERD EIA LK QMQ RET ESSQTPV K  DKGK VVQE QP                             
Subjt:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQP-----------------------------

Query:  PNSAS-----PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ
        P+  S     PYTKRIDNLRMP+GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+Q
Subjt:  PNSAS-----PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]6.5e-4061.96Show/hide
Query:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQP-----------------------------
        MSVMM DV  +  MAEMERKI+L MK V+ERD EIA LK QMQ RET ESSQTPV K  DKGK VVQE QP                             
Subjt:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQP-----------------------------

Query:  PNSAS-----PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ
        P+  S     PYTKRIDNLRMP+GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+Q
Subjt:  PNSAS-----PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.5e-4061.96Show/hide
Query:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQP-----------------------------
        MSVMM DV  +  MAEMERKI+L MK V+ERD EIA LK QMQ RET ESSQTPV K  DKGK VVQE QP                             
Subjt:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQP-----------------------------

Query:  PNSAS-----PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ
        P+  S     PYTKRIDNLRMP+GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+Q
Subjt:  PNSAS-----PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]6.5e-4061.96Show/hide
Query:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQP-----------------------------
        MSVMM DV  +  MAEMERKI+L MK V+ERD EIA LK QMQ RET ESSQTPV K  DKGK VVQE QP                             
Subjt:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQP-----------------------------

Query:  PNSAS-----PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ
        P+  S     PYTKRIDNLRMP+GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+Q
Subjt:  PNSAS-----PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]6.5e-4061.96Show/hide
Query:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQP-----------------------------
        MSVMM DV  +  MAEMERKI+L MK V+ERD EIA LK QMQ RET ESSQTPV K  DKGK VVQE QP                             
Subjt:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQP-----------------------------

Query:  PNSAS-----PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ
        P+  S     PYTKRIDNLRMP+GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+Q
Subjt:  PNSAS-----PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ

TrEMBL top hitse value%identityAlignment
A0A5A7T9K9 Ty3-gypsy retrotransposon protein1.7e-3857.67Show/hide
Query:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQPPNS--------------------------
        MSVMM D+ ++  MAEMERKI+  MK  EERD EI  L+ QM+ RET ESSQTPV K +DKGK VVQE QP                             
Subjt:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQPPNS--------------------------

Query:  --------ASPYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ
                + PYTKRID+LRMP+GYQPPKFQQFDGKGNPKQHIAHFVETCENAG+RGD LV+Q
Subjt:  --------ASPYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ

A0A5A7TCU7 Ty3-gypsy retrotransposon protein3.0e-3868.22Show/hide
Query:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQPPNSASPYTKRIDNLRMPVGYQPPKFQQFD
        MSVMM D+ ++  MAEM+RKI+  M  VEERD EI  L+ QM+ RET ESSQTP+ K +DKGK V+Q       + PYTKRIDNLRMP+GYQPPKFQQF+
Subjt:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQPPNSASPYTKRIDNLRMPVGYQPPKFQQFD

Query:  GKGNPKQHIAHFVETCENAGTRGDLLVKQ
        GKGNPKQHIAHFVETCENAG+RGD LV+Q
Subjt:  GKGNPKQHIAHFVETCENAGTRGDLLVKQ

A0A5A7VDN4 Ty3-gypsy retrotransposon protein4.6e-3958.28Show/hide
Query:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQPPNS--------------------------
        MSVMM D+ ++  MAEMERKI+  MK VEERD EI  L+ QM+ RET ESSQTPV K +DKGK VVQ+ QP                             
Subjt:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQPPNS--------------------------

Query:  --------ASPYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ
                + PYTKRIDNLRMP+GYQPPKFQQFDGKGNPKQHIAHFVETCENAG+RGD LV+Q
Subjt:  --------ASPYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ

A0A5D3D4X3 Ty3-gypsy retrotransposon protein1.0e-3857.06Show/hide
Query:  MSVMMVDV-ESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQPPNSAS-----------------------
        MSVM+ DV ES++RMAE+E+K+++ MK VEERD EIA+LKN +++R+  ESS     K +DKGK V+QE QP NS S                       
Subjt:  MSVMMVDV-ESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQPPNSAS-----------------------

Query:  ----------PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ
                  PYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGTRGDLLVKQ
Subjt:  ----------PYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ

A0A5D3D7S0 Ty3-gypsy retrotransposon protein1.3e-3865.71Show/hide
Query:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVV-------QEEQPPNS----ASPYTKRIDNLRMPV
        MSVMM D+ ++  +AEMERKI+  MK VE+RD EI  L+ QM+ RET ESSQTPV K +DKGK VV       Q  +PP +    + PYTKRIDNLRMP+
Subjt:  MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVV-------QEEQPPNS----ASPYTKRIDNLRMPV

Query:  GYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ
        GYQP KFQQFDGKGNPKQHIAHFVETCENAG+RGD LV+Q
Subjt:  GYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGATGATGGTCGATGTGGAATCTGACGAAAGGATGGCAGAGATGGAGAGAAAGATTAGTCTCTCGATGAAGCGCGTCGAAGAAAGGGATCTAGAGATTGCATA
CTTGAAGAATCAAATGCAGAATCGCGAGACTGTTGAGTCAAGTCAAACCCCTGTTGCAAAGAAGAGTGACAAAGGGAAGGTTGTTGTTCAAGAAGAGCAACCACCAAACT
CGGCCTCGCCGTACACTAAGAGAATAGACAATCTGAGGATGCCCGTCGGATACCAACCTCCCAAATTTCAACAGTTCGATGGGAAAGGAAACCCGAAGCAGCATATCGCT
CACTTTGTGGAAACATGCGAGAACGCTGGGACTCGCGGCGACCTTCTAGTCAAACAGATTCGTTCAGATGCACCGAAAAGGGAACACCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGATGATGGTCGATGTGGAATCTGACGAAAGGATGGCAGAGATGGAGAGAAAGATTAGTCTCTCGATGAAGCGCGTCGAAGAAAGGGATCTAGAGATTGCATA
CTTGAAGAATCAAATGCAGAATCGCGAGACTGTTGAGTCAAGTCAAACCCCTGTTGCAAAGAAGAGTGACAAAGGGAAGGTTGTTGTTCAAGAAGAGCAACCACCAAACT
CGGCCTCGCCGTACACTAAGAGAATAGACAATCTGAGGATGCCCGTCGGATACCAACCTCCCAAATTTCAACAGTTCGATGGGAAAGGAAACCCGAAGCAGCATATCGCT
CACTTTGTGGAAACATGCGAGAACGCTGGGACTCGCGGCGACCTTCTAGTCAAACAGATTCGTTCAGATGCACCGAAAAGGGAACACCTTTGA
Protein sequenceShow/hide protein sequence
MSVMMVDVESDERMAEMERKISLSMKRVEERDLEIAYLKNQMQNRETVESSQTPVAKKSDKGKVVVQEEQPPNSASPYTKRIDNLRMPVGYQPPKFQQFDGKGNPKQHIA
HFVETCENAGTRGDLLVKQIRSDAPKREHL