| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa] | 6.2e-157 | 47.51 | Show/hide |
Query: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
M EG S REHVL+MM +FN+AEMNGA IDE+SQV+FILE+LP+SFLQFRSN VMNKI+Y+LTTLLNELQ F+SLM I+ + EANVA R +HRGSTS
Subjt: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
Query: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
TK + PS KK K KKG K + AAA+ K K A G FH N +GHWKRNC K+LA++K GK DLLV ETCLVE++DSAWI+DSGATNHV
Subjt: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
Query: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
CSSFQGISSW+QL
Subjt: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
Query: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
T+ KR+ +SPKEN HLWHLR GHINLNRIERLVK+GLLSELEEN LPVCESCL+GK+ F+GKG+RAK+ LEL+HSDLC
Subjt: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
Query: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
GPM++KARGG+EYF++F +DYSRYGY+YLM K E LEKFKEYK EVEN L
Subjt: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
Query: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
V+TAVY+LN VPSKSV ETP K+WNGRKGSL HF IWGCP H+ GG FYDPK
Subjt: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
Query: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
+N+V VST+A FLEEDH+++H PRSKIVLNE+ S RV + S T VV +S++ + Q PRRSGRV P RYM L ET V D D E
Subjt: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
Query: DPLTYDQAMTDVDKDEWIKVMD
DPLT+ +AM DVDKDEWIK M+
Subjt: DPLTYDQAMTDVDKDEWIKVMD
|
|
| KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa] | 6.2e-157 | 47.51 | Show/hide |
Query: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
M EG S REHVL+MM +FN+AEMNGA IDE+SQV+FILE+LP+SFLQFRSN VMNKI+Y+LTTLLNELQ F+SLM I+ + EANVA R +HRGSTS
Subjt: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
Query: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
TK + PS KK K KKG K + AAA+ K K A G FH N +GHWKRNC K+LA++K GK DLLV ETCLVE++DSAWI+DSGATNHV
Subjt: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
Query: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
CSSFQGISSW+QL
Subjt: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
Query: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
T+ KR+ +SPKEN HLWHLR GHINLNRIERLVK+GLLSELEEN LPVCESCL+GK+ F+GKG+RAK+ LEL+HSDLC
Subjt: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
Query: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
GPM++KARGG+EYF++F +DYSRYGY+YLM K E LEKFKEYK EVEN L
Subjt: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
Query: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
V+TAVY+LN VPSKSV ETP K+WNGRKGSL HF IWGCP H+ GG FYDPK
Subjt: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
Query: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
+N+V VST+A FLEEDH+++H PRSKIVLNE+ S RV + S T VV +S++ + Q PRRSGRV P RYM L ET V D D E
Subjt: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
Query: DPLTYDQAMTDVDKDEWIKVMD
DPLT+ +AM DVDKDEWIK M+
Subjt: DPLTYDQAMTDVDKDEWIKVMD
|
|
| KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa] | 6.2e-157 | 47.51 | Show/hide |
Query: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
M EG S REHVL+MM +FN+AEMNGA IDE+SQV+FILE+LP+SFLQFRSN VMNKI+Y+LTTLLNELQ F+SLM I+ + EANVA R +HRGSTS
Subjt: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
Query: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
TK + PS KK K KKG K + AAA+ K K A G FH N +GHWKRNC K+LA++K GK DLLV ETCLVE++DSAWI+DSGATNHV
Subjt: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
Query: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
CSSFQGISSW+QL
Subjt: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
Query: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
T+ KR+ +SPKEN HLWHLR GHINLNRIERLVK+GLLSELEEN LPVCESCL+GK+ F+GKG+RAK+ LEL+HSDLC
Subjt: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
Query: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
GPM++KARGG+EYF++F +DYSRYGY+YLM K E LEKFKEYK EVEN L
Subjt: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
Query: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
V+TAVY+LN VPSKSV ETP K+WNGRKGSL HF IWGCP H+ GG FYDPK
Subjt: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
Query: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
+N+V VST+A FLEEDH+++H PRSKIVLNE+ S RV + S T VV +S++ + Q PRRSGRV P RYM L ET V D D E
Subjt: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
Query: DPLTYDQAMTDVDKDEWIKVMD
DPLT+ +AM DVDKDEWIK M+
Subjt: DPLTYDQAMTDVDKDEWIKVMD
|
|
| KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa] | 6.2e-157 | 47.51 | Show/hide |
Query: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
M EG S REHVL+MM +FN+AEMNGA IDE+SQV+FILE+LP+SFLQFRSN VMNKI+Y+LTTLLNELQ F+SLM I+ + EANVA R +HRGSTS
Subjt: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
Query: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
TK + PS KK K KKG K + AAA+ K K A G FH N +GHWKRNC K+LA++K GK DLLV ETCLVE++DSAWI+DSGATNHV
Subjt: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
Query: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
CSSFQGISSW+QL
Subjt: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
Query: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
T+ KR+ +SPKEN HLWHLR GHINLNRIERLVK+GLLSELEEN LPVCESCL+GK+ F+GKG+RAK+ LEL+HSDLC
Subjt: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
Query: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
GPM++KARGG+EYF++F +DYSRYGY+YLM K E LEKFKEYK EVEN L
Subjt: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
Query: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
V+TAVY+LN VPSKSV ETP K+WNGRKGSL HF IWGCP H+ GG FYDPK
Subjt: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
Query: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
+N+V VST+A FLEEDH+++H PRSKIVLNE+ S RV + S T VV +S++ + Q PRRSGRV P RYM L ET V D D E
Subjt: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
Query: DPLTYDQAMTDVDKDEWIKVMD
DPLT+ +AM DVDKDEWIK M+
Subjt: DPLTYDQAMTDVDKDEWIKVMD
|
|
| TYK14550.1 gag/pol protein [Cucumis melo var. makuwa] | 6.2e-157 | 47.51 | Show/hide |
Query: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
M EG S REHVL+MM +FN+AEMNGA IDE+SQV+FILE+LP+SFLQFRSN VMNKI+Y+LTTLLNELQ F+SLM I+ + EANVA R +HRGSTS
Subjt: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
Query: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
TK + PS KK K KKG K + AAA+ K K A G FH N +GHWKRNC K+LA++K GK DLLV ETCLVE++DSAWI+DSGATNHV
Subjt: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
Query: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
CSSFQGISSW+QL
Subjt: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
Query: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
T+ KR+ +SPKEN HLWHLR GHINLNRIERLVK+GLLSELEEN LPVCESCL+GK+ F+GKG+RAK+ LEL+HSDLC
Subjt: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
Query: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
GPM++KARGG+EYF++F +DYSRYGY+YLM K E LEKFKEYK EVEN L
Subjt: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
Query: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
V+TAVY+LN VPSKSV ETP K+WNGRKGSL HF IWGCP H+ GG FYDPK
Subjt: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
Query: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
+N+V VST+A FLEEDH+++H PRSKIVLNE+ S RV + S T VV +S++ + Q PRRSGRV P RYM L ET V D D E
Subjt: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
Query: DPLTYDQAMTDVDKDEWIKVMD
DPLT+ +AM DVDKDEWIK M+
Subjt: DPLTYDQAMTDVDKDEWIKVMD
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SMH8 Gag/pol protein | 3.0e-157 | 47.51 | Show/hide |
Query: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
M EG S REHVL+MM +FN+AEMNGA IDE+SQV+FILE+LP+SFLQFRSN VMNKI+Y+LTTLLNELQ F+SLM I+ + EANVA R +HRGSTS
Subjt: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
Query: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
TK + PS KK K KKG K + AAA+ K K A G FH N +GHWKRNC K+LA++K GK DLLV ETCLVE++DSAWI+DSGATNHV
Subjt: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
Query: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
CSSFQGISSW+QL
Subjt: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
Query: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
T+ KR+ +SPKEN HLWHLR GHINLNRIERLVK+GLLSELEEN LPVCESCL+GK+ F+GKG+RAK+ LEL+HSDLC
Subjt: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
Query: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
GPM++KARGG+EYF++F +DYSRYGY+YLM K E LEKFKEYK EVEN L
Subjt: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
Query: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
V+TAVY+LN VPSKSV ETP K+WNGRKGSL HF IWGCP H+ GG FYDPK
Subjt: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
Query: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
+N+V VST+A FLEEDH+++H PRSKIVLNE+ S RV + S T VV +S++ + Q PRRSGRV P RYM L ET V D D E
Subjt: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
Query: DPLTYDQAMTDVDKDEWIKVMD
DPLT+ +AM DVDKDEWIK M+
Subjt: DPLTYDQAMTDVDKDEWIKVMD
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| A0A5A7TWB9 Gag/pol protein | 3.0e-157 | 47.51 | Show/hide |
Query: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
M EG S REHVL+MM +FN+AEMNGA IDE+SQV+FILE+LP+SFLQFRSN VMNKI+Y+LTTLLNELQ F+SLM I+ + EANVA R +HRGSTS
Subjt: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
Query: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
TK + PS KK K KKG K + AAA+ K K A G FH N +GHWKRNC K+LA++K GK DLLV ETCLVE++DSAWI+DSGATNHV
Subjt: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
Query: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
CSSFQGISSW+QL
Subjt: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
Query: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
T+ KR+ +SPKEN HLWHLR GHINLNRIERLVK+GLLSELEEN LPVCESCL+GK+ F+GKG+RAK+ LEL+HSDLC
Subjt: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
Query: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
GPM++KARGG+EYF++F +DYSRYGY+YLM K E LEKFKEYK EVEN L
Subjt: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
Query: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
V+TAVY+LN VPSKSV ETP K+WNGRKGSL HF IWGCP H+ GG FYDPK
Subjt: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
Query: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
+N+V VST+A FLEEDH+++H PRSKIVLNE+ S RV + S T VV +S++ + Q PRRSGRV P RYM L ET V D D E
Subjt: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
Query: DPLTYDQAMTDVDKDEWIKVMD
DPLT+ +AM DVDKDEWIK M+
Subjt: DPLTYDQAMTDVDKDEWIKVMD
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| A0A5A7V4M1 Gag/pol protein | 3.0e-157 | 47.51 | Show/hide |
Query: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
M EG S REHVL+MM +FN+AEMNGA IDE+SQV+FILE+LP+SFLQFRSN VMNKI+Y+LTTLLNELQ F+SLM I+ + EANVA R +HRGSTS
Subjt: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
Query: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
TK + PS KK K KKG K + AAA+ K K A G FH N +GHWKRNC K+LA++K GK DLLV ETCLVE++DSAWI+DSGATNHV
Subjt: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
Query: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
CSSFQGISSW+QL
Subjt: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
Query: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
T+ KR+ +SPKEN HLWHLR GHINLNRIERLVK+GLLSELEEN LPVCESCL+GK+ F+GKG+RAK+ LEL+HSDLC
Subjt: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
Query: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
GPM++KARGG+EYF++F +DYSRYGY+YLM K E LEKFKEYK EVEN L
Subjt: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
Query: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
V+TAVY+LN VPSKSV ETP K+WNGRKGSL HF IWGCP H+ GG FYDPK
Subjt: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
Query: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
+N+V VST+A FLEEDH+++H PRSKIVLNE+ S RV + S T VV +S++ + Q PRRSGRV P RYM L ET V D D E
Subjt: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
Query: DPLTYDQAMTDVDKDEWIKVMD
DPLT+ +AM DVDKDEWIK M+
Subjt: DPLTYDQAMTDVDKDEWIKVMD
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| A0A5D3CPJ6 Gag/pol protein | 3.0e-157 | 47.51 | Show/hide |
Query: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
M EG S REHVL+MM +FN+AEMNGA IDE+SQV+FILE+LP+SFLQFRSN VMNKI+Y+LTTLLNELQ F+SLM I+ + EANVA R +HRGSTS
Subjt: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
Query: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
TK + PS KK K KKG K + AAA+ K K A G FH N +GHWKRNC K+LA++K GK DLLV ETCLVE++DSAWI+DSGATNHV
Subjt: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
Query: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
CSSFQGISSW+QL
Subjt: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
Query: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
T+ KR+ +SPKEN HLWHLR GHINLNRIERLVK+GLLSELEEN LPVCESCL+GK+ F+GKG+RAK+ LEL+HSDLC
Subjt: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
Query: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
GPM++KARGG+EYF++F +DYSRYGY+YLM K E LEKFKEYK EVEN L
Subjt: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
Query: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
V+TAVY+LN VPSKSV ETP K+WNGRKGSL HF IWGCP H+ GG FYDPK
Subjt: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
Query: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
+N+V VST+A FLEEDH+++H PRSKIVLNE+ S RV + S T VV +S++ + Q PRRSGRV P RYM L ET V D D E
Subjt: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
Query: DPLTYDQAMTDVDKDEWIKVMD
DPLT+ +AM DVDKDEWIK M+
Subjt: DPLTYDQAMTDVDKDEWIKVMD
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| A0A5D3CSZ6 Gag/pol protein | 3.0e-157 | 47.51 | Show/hide |
Query: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
M EG S REHVL+MM +FN+AEMNGA IDE+SQV+FILE+LP+SFLQFRSN VMNKI+Y+LTTLLNELQ F+SLM I+ + EANVA R +HRGSTS
Subjt: MKEGTSAREHVLDMMTYFNLAEMNGASIDESSQVNFILETLPKSFLQFRSNVVMNKISYSLTTLLNELQNFQSLMMIRTPEAEANVA--YRSYHRGSTSE
Query: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
TK + PS KK K KKG K + AAA+ K K A G FH N +GHWKRNC K+LA++K GK DLLV ETCLVE++DSAWI+DSGATNHV
Subjt: TKLIAPSHPKGKKKKMKKG----KVDRAAAQKGIKVKEVAENGKSFHFNGDGHWKRNCLKFLADRKNT--GKCDLLVTETCLVESNDSAWILDSGATNHV
Query: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
CSSFQGISSW+QL
Subjt: CSSFQGISSWQQLREE------------------------------------------------------------------------------------
Query: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
T+ KR+ +SPKEN HLWHLR GHINLNRIERLVK+GLLSELEEN LPVCESCL+GK+ F+GKG+RAK+ LEL+HSDLC
Subjt: -------------------TRTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGKL----FSGKGYRAKDLLELIHSDLC
Query: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
GPM++KARGG+EYF++F +DYSRYGY+YLM K E LEKFKEYK EVEN L
Subjt: GPMSLKARGGYEYFVSFINDYSRYGYIYLMHRKFETLEKFKEYKIEVENLL-------------------------------------------------
Query: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
V+TAVY+LN VPSKSV ETP K+WNGRKGSL HF IWGCP H+ GG FYDPK
Subjt: ------------------------VETAVYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHL-------------------------GGLFYDPK
Query: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
+N+V VST+A FLEEDH+++H PRSKIVLNE+ S RV + S T VV +S++ + Q PRRSGRV P RYM L ET V D D E
Subjt: ENRVLVSTDAIFLEEDHVKDHLPRSKIVLNEMD----SISARVADGASTSTSVVDPSTSSQV-RSQEFGMPRRSGRVVRQPERYMGLAETQVVTPDDDCE
Query: DPLTYDQAMTDVDKDEWIKVMD
DPLT+ +AM DVDKDEWIK M+
Subjt: DPLTYDQAMTDVDKDEWIKVMD
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 1.8e-10 | 29.01 | Show/hide |
Query: VNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELE-----ENYLPVCESCLDGKLFSGKGYRAKDL------LELIHSDLCGPMSLKARGGYEYFVSF
+N K N LWH RFGHI+ ++ + + + S+ E +CE CL+GK + KD L ++HSD+CGP++ YFV F
Subjt: VNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELE-----ENYLPVCESCLDGKLFSGKGYRAKDL------LELIHSDLCGPMSLKARGGYEYFVSF
Query: INDYSRYGYIYLMHRKFETLEKFKEYKIEVE
++ ++ Y YL+ K + F+++ + E
Subjt: INDYSRYGYIYLMHRKFETLEKFKEYKIEVE
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.8e-16 | 30.72 | Show/hide |
Query: NVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGK----LFSGKGYRAKDLLELIHSDLCGPMSLKARGGYEYFVSFINDYSRYGYIYLMH
+V LWH R GH++ ++ L K L+S + + C+ CL GK F R ++L+L++SD+CGPM +++ GG +YFV+FI+D SR ++Y++
Subjt: NVHLWHLRFGHINLNRIERLVKSGLLSELEENYLPVCESCLDGK----LFSGKGYRAKDLLELIHSDLCGPMSLKARGGYEYFVSFINDYSRYGYIYLMH
Query: RKFETLEKFKEYKIEVENLLVETA--VYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHLG
K + + F+++ VE ET + L + F+ + G H + G P H G
Subjt: RKFETLEKFKEYKIEVENLLVETA--VYVLNNVPSKSVCETPFKVWNGRKGSLHHFIIWGCPTHLG
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| P25384 Transposon Ty2-C Gag-Pol polyprotein | 6.7e-05 | 26.98 | Show/hide |
Query: RTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLP-------VCESCLDGKLFSG---KGYRAK-----DLLELIHSDLCGPMSLKARG
++K VN P L H GH N I++ +K ++ L+E+ + C CL GK KG R K + + +H+D+ GP+ +
Subjt: RTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLP-------VCESCLDGKLFSG---KGYRAK-----DLLELIHSDLCGPMSLKARG
Query: GYEYFVSFINDYSRYGYIYLMHRKFE
YF+SF ++ +R+ ++Y +H + E
Subjt: GYEYFVSFINDYSRYGYIYLMHRKFE
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| Q12472 Transposon Ty2-DR1 Gag-Pol polyprotein | 6.7e-05 | 26.98 | Show/hide |
Query: RTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLP-------VCESCLDGKLFSG---KGYRAK-----DLLELIHSDLCGPMSLKARG
++K VN P L H GH N I++ +K ++ L+E+ + C CL GK KG R K + + +H+D+ GP+ +
Subjt: RTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLP-------VCESCLDGKLFSG---KGYRAK-----DLLELIHSDLCGPMSLKARG
Query: GYEYFVSFINDYSRYGYIYLMHRKFE
YF+SF ++ +R+ ++Y +H + E
Subjt: GYEYFVSFINDYSRYGYIYLMHRKFE
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 6.7e-05 | 26.98 | Show/hide |
Query: RTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLP-------VCESCLDGKLFSG---KGYRAK-----DLLELIHSDLCGPMSLKARG
++K VN P L H GH N I++ +K ++ L+E+ + C CL GK KG R K + + +H+D+ GP+ +
Subjt: RTKRVNVSPKENVHLWHLRFGHINLNRIERLVKSGLLSELEENYLP-------VCESCLDGKLFSG---KGYRAK-----DLLELIHSDLCGPMSLKARG
Query: GYEYFVSFINDYSRYGYIYLMHRKFE
YF+SF ++ +R+ ++Y +H + E
Subjt: GYEYFVSFINDYSRYGYIYLMHRKFE
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