CuGenDBv2

Gene ID	Tan0001291
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Complex1_LYR domain-containing protein
Genome location	LG09:48724329..48729826
RNA-Seq Expression	Tan0001291
Synteny	Tan0001291
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004144434.1 uncharacterized protein LOC101204721 [Cucumis sativus]

1.5e-44

86.24

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVK H+GKE+SKKHFVDYV Q FRDKS LS+PH IQQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRS+EMKR+LGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GL LPE YQ
Subjt:  GLRLPEAYQ

XP_022134018.1 uncharacterized protein LOC111006395 [Momordica charantia]

1.2e-44

88.07

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MSSEALQVA+VYR+LLKAVKNHIGKE+SKKHFVDYV Q FR++S LSEPH +QQKIKLA DY  LLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GLRLPEAYQ
Subjt:  GLRLPEAYQ

XP_022933120.1 uncharacterized protein LOC111439884 [Cucurbita moschata]

1.8e-45

88.07

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVK HIGKE++KKHFVDYV Q FR+KSTLS+PH +QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GL+LPE YQ
Subjt:  GLRLPEAYQ

XP_022967927.1 uncharacterized protein LOC111467294 [Cucurbita maxima]

3.7e-46

88.99

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVKNHIGKE++KKHFVDYV Q FR+KSTLS+PH +QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GL+LPE YQ
Subjt:  GLRLPEAYQ

XP_038889144.1 uncharacterized protein LOC120079034 [Benincasa hispida]

9.0e-45

87.16

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVKNHIGKE+SKKHFVDYV Q FRDK+ LS+PH +QQ+IKLA DYTFLLNSVHHQKDLLFSYNIA+DRSEEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GL+LPE YQ
Subjt:  GLRLPEAYQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9E2 Uncharacterized protein

7.4e-45

86.24

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVK H+GKE+SKKHFVDYV Q FRDKS LS+PH IQQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRS+EMKR+LGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GL LPE YQ
Subjt:  GLRLPEAYQ

A0A2P6SJM5 Putative complex 1 LYR protein

7.2e-40

79.82

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MS+EALQVAKVYR LLKAVKNH+ KED+K+HF DYVT+ FR+   LS+   IQQKIKLARDYT+LLNSVHHQKDLLFSYNIAIDRS EMKR+LGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GL+LPE YQ
Subjt:  GLRLPEAYQ

A0A6J1C0V5 uncharacterized protein LOC111006395

5.7e-45

88.07

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MSSEALQVA+VYR+LLKAVKNHIGKE+SKKHFVDYV Q FR++S LSEPH +QQKIKLA DY  LLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GLRLPEAYQ
Subjt:  GLRLPEAYQ

A0A6J1EY92 uncharacterized protein LOC111439884

8.8e-46

88.07

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVK HIGKE++KKHFVDYV Q FR+KSTLS+PH +QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GL+LPE YQ
Subjt:  GLRLPEAYQ

A0A6J1HS51 uncharacterized protein LOC111467294

1.8e-46

88.99

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVKNHIGKE++KKHFVDYV Q FR+KSTLS+PH +QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GL+LPE YQ
Subjt:  GLRLPEAYQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51960.1 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

3.2e-32

62.39

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Query:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MS E +  A+VYR LLKAV  H+GKED K HF+D+V Q FR  +         +KI LAR+YT+LLNS+H  KDLLFSYNIA+DR+EEMKR+L KSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQ
        GLRLPE Y+
Subjt:  GLRLPEAYQ

Sequences

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CDS sequence

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ATGAGTTCAGAAGCCTTGCAGGTAGCCAAGGTTTACCGCCAGCTTCTCAAAGCTGTAAAGAACCACATCGGAAAAGAGGATAGCAAGAAGCATTTTGTGGACTATGTGAC
CCAAAATTTCAGGGATAAAAGCACACTTTCAGAACCCCATTTTATTCAACAGAAAATCAAGCTTGCTCGCGATTACACATTTCTACTTAACAGCGTGCACCATCAAAAGG
ACTTGCTATTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTAGACTTCCCGAAGCCTATCAAGCC
TGA

mRNA sequence

Show/hide mRNA sequence

ATTAAATGGTCCAAAATTTGCAATTTCCCATTCATCTTCCTCTCTCACTAACGTGCTCCACCTTCTTCTTCCCGCCGCCTCCTCCTACGTTTCAGCAGCTCAGTGTCACT
GTCGCTCTCTCCCGTTCAGTGACGCCGCTGCCGTCTTTCTTCCGCTCGTGCCGCCGTTGCCTTCCTCTCAGCGGGTTTAATTTGCAGTGATTTTTCACTCTATTACTTTT
ACTGATAATGGAATTGTGAAGTTTTTGAGTGACAAAAAGAGGCTTGAATTGAAGACTTCAAAGTTTTCAAAATGAGTTCAGAAGCCTTGCAGGTAGCCAAGGTTTACCGC
CAGCTTCTCAAAGCTGTAAAGAACCACATCGGAAAAGAGGATAGCAAGAAGCATTTTGTGGACTATGTGACCCAAAATTTCAGGGATAAAAGCACACTTTCAGAACCCCA
TTTTATTCAACAGAAAATCAAGCTTGCTCGCGATTACACATTTCTACTTAACAGCGTGCACCATCAAAAGGACTTGCTATTCTCGTACAACATTGCTATTGATAGATCAG
AGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTAGACTTCCCGAAGCCTATCAAGCCTGATGCCTTGTGGTTGTTTTAATAACGTAAGCAAAGAAG
AAAAAGCACTTCGATTAGCTGCCAGCTTGCCAGATTTAATTATTCTTGATCCTTTTCTACCATCTTATACTTCAATTTTATGTGCATTGAAAGAAGCAAGGGCAGATTAG
AAGGTTTTATATATAATGAGAATTTCCCTCTTATTAGGTGAATTTGACAGCAATCTAGGGTGTTATTTGTTACTTCCAATTAATGTTAACTTTATAATGTGACAAAAGTG
TTGTTGAAATTTTGATTGTGTAATAGTGGACCTGCTTCATA

Protein sequence

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MSSEALQVAKVYRQLLKAVKNHIGKEDSKKHFVDYVTQNFRDKSTLSEPHFIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASVGLRLPEAYQA

Tan0001291 (gene) of Snake gourd v1 genome