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Tan0001294 (gene) of Snake gourd v1 genome

Gene IDTan0001294
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSignal recognition particle 9 kDa protein
Genome locationLG07:74021573..74023698
RNA-Seq ExpressionTan0001294
SyntenyTan0001294
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0045900 - negative regulation of translational elongation (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR008832 - Signal recognition particle, SRP9 subunit
IPR009018 - Signal recognition particle, SRP9/SRP14 subunit
IPR039432 - SRP9 domain
IPR039914 - Signal recognition particle SRP9


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571487.1 Signal recognition particle 9 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]2.5e-4996.12Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQD KKMEKLNNIFFTLMARGP+VDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_022146059.1 signal recognition particle 9 kDa protein isoform X1 [Momordica charantia]1.3e-5098.06Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYITSWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQD KKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_022963515.1 signal recognition particle 9 kDa protein [Cucurbita moschata]8.7e-5097.09Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQD KKMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_022967500.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima]3.3e-4996.12Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQD KKMEKL+NIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_038887366.1 signal recognition particle 9 kDa protein [Benincasa hispida]2.5e-4995.15Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVY+ SWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQD KKMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

TrEMBL top hitse value%identityAlignment
A0A1S3BLU0 Signal recognition particle 9 kDa protein2.7e-4995.15Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQD KKMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1CY87 Signal recognition particle 9 kDa protein6.5e-5198.06Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYITSWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQD KKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1HI87 Signal recognition particle 9 kDa protein4.2e-5097.09Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQD KKMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1HSA1 Signal recognition particle 9 kDa protein1.6e-4996.12Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQD KKMEKL+NIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1K1A1 Signal recognition particle 9 kDa protein2.7e-4995.15Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQD KKMEKLNNIFF LMARGPDVDISEVTGKEQ DAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

SwissProt top hitse value%identityAlignment
O04438 Signal recognition particle 9 kDa protein3.3e-4481.55Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVY+ SW+EFVERSVQLFR DPN+TRY +KYRHC+GKLVLKVTD+RECLKFKTDQAQD KKMEKLNNIFF LM RGPDVDISEV+GKEQ + Q  KKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        R+Q
Subjt:  RKQ

P34642 Signal recognition particle 9 kDa protein4.0e-1349.25Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNN
        M Y TSWDEF + + +L  ++P   R+  KY H  G+LVLK+TD+  CL++ T+Q QDVKK+EKL++
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNN

P49458 Signal recognition particle 9 kDa protein8.8e-1350Show/hide
Query:  SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLM
        +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL +KTDQAQDVKK+EK ++    LM
Subjt:  SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLM

Q55GL2 Signal recognition particle 9 kDa protein6.5e-1649.3Show/hide
Query:  VYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTL
        +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT++   LKF+TD+  D K+++++N++FF L
Subjt:  VYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTL

Q9SMU7 Signal recognition particle 9 kDa protein2.5e-4786.41Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+ KKMEKLNNIFFTLMARGPDVD+SEVTGKEQ++ QP KKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

Arabidopsis top hitse value%identityAlignment
AT3G49100.1 Signal recognition particle, SRP9/SRP14 subunit1.8e-4886.41Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+ KKMEKLNNIFFTLMARGPDVD+SEVTGKEQ++ QP KKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTACATTACCTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAATTCCACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAA
GCTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGACGTCAAGAAGATGGAAAAACTCAATAACATATTCTTCACTCTGATGG
CCCGGGGCCCTGATGTGGATATATCGGAAGTGACGGGCAAAGAGCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTACATTACCTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAATTCCACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAA
GCTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGACGTCAAGAAGATGGAAAAACTCAATAACATATTCTTCACTCTGATGG
CCCGGGGCCCTGATGTGGATATATCGGAAGTGACGGGCAAAGAGCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA
Protein sequenceShow/hide protein sequence
MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ