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Tan0001315 (gene) of Snake gourd v1 genome

Gene IDTan0001315
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNA-directed RNA polymerase
Genome locationLG10:7025534..7026087
RNA-Seq ExpressionTan0001315
SyntenyTan0001315
Gene Ontology termsGO:0001172 - transcription, RNA-templated (biological process)
GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597448.1 hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sororia]7.5e-2689.55Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPNTMKISTS
        MGWLQSLFSPLKKLWFRLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP    TMK+S S
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPNTMKISTS

KGN56989.1 hypothetical protein Csa_010650 [Cucumis sativus]3.0e-27100Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP
        MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP

ONI26253.1 hypothetical protein PRUPE_1G012900 [Prunus persica]4.5e-2387.3Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPPNTM
        MGWL SLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVE+HTP LP  +M
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPPNTM

PHT38775.1 hypothetical protein CQW23_22348 [Capsicum baccatum]7.0e-2493.33Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP

RXH80416.1 hypothetical protein DVH24_041563 [Malus domestica]3.5e-2386.67Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPN
        MGWL SLFSPLKK+WFRLHS PKKRRGIYILYEDVKSCPCEDVHVLWSILVE+HT   P+
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPN

TrEMBL top hitse value%identityAlignment
A0A0A0L7K5 Uncharacterized protein1.5e-27100Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP
        MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP

A0A2G2W0L8 Uncharacterized protein3.4e-2493.33Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP

A0A2G2ZVG2 Uncharacterized protein3.4e-2493.33Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP

A0A498IAF8 Uncharacterized protein1.7e-2386.67Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPN
        MGWL SLFSPLKK+WFRLHS PKKRRGIYILYEDVKSCPCEDVHVLWSILVE+HT   P+
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPN

M5XVP0 Uncharacterized protein2.2e-2387.3Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPPNTM
        MGWL SLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVE+HTP LP  +M
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPPNTM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGCCGAAGAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATC
CTGTCCCTGTGAAGATGTACATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAATACAATGAAGATTTCAACCTCCTAA
mRNA sequenceShow/hide mRNA sequence
CAAAAACAAAAACATTCCCTTTGCTCTTTCTTTGTATTATTCTCTCTTCATGAGCTGAGGCATTTTCCCTCCATTTCTCTTTTCCAAATGGGGTGGCTCCAATCCCTCTT
CTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGCCGAAGAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTACATG
TGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAATACAATGAAGATTTCAACCTCCTAAACACACAGTTTCCCCACCAATGTACATAAAATATTTATA
ATGCTTTTACATACTGAAGG
Protein sequenceShow/hide protein sequence
MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPNTMKISTS