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Tan0001322 (gene) of Snake gourd v1 genome

Gene IDTan0001322
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG01:40687786..40688019
RNA-Seq ExpressionTan0001322
SyntenyTan0001322
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SV +HVL+M+VHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SV +HVL+M+VHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]2.0e-2273.33Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDE
        +SD+LAKKHE  ITAKEIMDS+Q MFGQ S+QARH ALK+I+NSRM EG+SV +HVL+++VHFN+AESNGA IDE
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDE

XP_022155999.1 uncharacterized protein LOC111022974 [Momordica charantia]2.9e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS
        +SD+LAKKHE M+ A+EIMDS++ MFGQ S QARH ALK+I+NSRM EGTS+ +HVL+++VHFN+AE NGA IDE S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]2.2e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS
        +SD+LAKKHE  +T KEIMDS+Q MFGQ S QARH ALK+++NSRM EG+SV +HVL+++VHFN+AESNG  IDE S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.8e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SV +HVL+M+VHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS

A0A5D3CPJ6 Gag/pol protein1.8e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SV +HVL+M+VHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS

A0A6J1DFZ2 uncharacterized protein LOC1110200959.6e-2373.33Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDE
        +SD+LAKKHE  ITAKEIMDS+Q MFGQ S+QARH ALK+I+NSRM EG+SV +HVL+++VHFN+AESNGA IDE
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDE

A0A6J1DRZ2 uncharacterized protein LOC1110229741.4e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS
        +SD+LAKKHE M+ A+EIMDS++ MFGQ S QARH ALK+I+NSRM EGTS+ +HVL+++VHFN+AE NGA IDE S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS

A0A6J1DWL0 uncharacterized protein LOC1110247341.1e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS
        +SD+LAKKHE  +T KEIMDS+Q MFGQ S QARH ALK+++NSRM EG+SV +HVL+++VHFN+AESNG  IDE S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATTACCGCCAAGGAAATCATGGATTCTGTGCAGGGTATGTTTGGACAACAGTCCACACAGGCCCGACACAATGC
CCTAAAGTACATATTTAACTCAAGGATGCTAGAGGGTACATCTGTTTTGGATCATGTCCTGGATATGTTGGTGCACTTTAACATCGCGGAGTCGAATGGTGCTTCCATCG
ATGAGTCGAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATTACCGCCAAGGAAATCATGGATTCTGTGCAGGGTATGTTTGGACAACAGTCCACACAGGCCCGACACAATGC
CCTAAAGTACATATTTAACTCAAGGATGCTAGAGGGTACATCTGTTTTGGATCATGTCCTGGATATGTTGGTGCACTTTAACATCGCGGAGTCGAATGGTGCTTCCATCG
ATGAGTCGAGCTAG
Protein sequenceShow/hide protein sequence
MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVLDHVLDMLVHFNIAESNGASIDESS