; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001351 (gene) of Snake gourd v1 genome

Gene IDTan0001351
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG04:30437022..30437831
RNA-Seq ExpressionTan0001351
SyntenyTan0001351
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]4.7e-7557.93Show/hide
Query:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLF-DQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEV
        M SKK  S  +AAS+ Y GP+TRS SKG+    D+   A+A  + K L E+ KA IVIK+NPL+ D  + +   LKE  + D+MSVMMADV  + +MAE+
Subjt:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLF-DQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEV

Query:  EKKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRID
        E+KINLLMK ++++D EIA +K Q+Q+R+TAES+ TP                                 DMI NSIR QYGGPSQ   MYSKPYTKRID
Subjt:  EKKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE
        NLRMP GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE+I+SWE
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.8e-7457.56Show/hide
Query:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLF-DQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEV
        M SKK  S  +AAS+ Y GP+TRS SKG+    D+   A+A  + K L E+ KA IVIK+NPL+ D  + +   LKE  + D+MSVMMADV  + +MAE+
Subjt:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLF-DQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEV

Query:  EKKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRID
        E+KINLLMK ++++D EIA +K Q+Q+R+TAES+ TP                                 DMI +SIR QYGGPSQ   MYSKPYTKRID
Subjt:  EKKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE
        NLRMP GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE+I+SWE
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.8e-7457.56Show/hide
Query:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLF-DQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEV
        M SKK  S  +AAS+ Y GP+TRS SKG+    D+   A+A  + K L E+ KA IVIK+NPL+ D  + +   LKE  + D+MSVMMADV  + +MAE+
Subjt:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLF-DQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEV

Query:  EKKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRID
        E+KINLLMK ++++D EIA +K Q+Q+R+TAES+ TP                                 DMI +SIR QYGGPSQ   MYSKPYTKRID
Subjt:  EKKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE
        NLRMP GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE+I+SWE
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.8e-7457.56Show/hide
Query:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLF-DQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEV
        M SKK  S  +AAS+ Y GP+TRS SKG+    D+   A+A  + K L E+ KA IVIK+NPL+ D  + +   LKE  + D+MSVMMADV  + +MAE+
Subjt:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLF-DQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEV

Query:  EKKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRID
        E+KINLLMK ++++D EIA +K Q+Q+R+TAES+ TP                                 DMI +SIR QYGGPSQ   MYSKPYTKRID
Subjt:  EKKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE
        NLRMP GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE+I+SWE
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]4.7e-7557.93Show/hide
Query:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLF-DQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEV
        M SKK  S  +AAS+ Y GP+TRS SKG+    D+   A+A  + K L E+ KA IVIK+NPL+ D  + +   LKE  + D+MSVMMADV  + +MAE+
Subjt:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLF-DQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEV

Query:  EKKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRID
        E+KINLLMK ++++D EIA +K Q+Q+R+TAES+ TP                                 DMI NSIR QYGGPSQ   MYSKPYTKRID
Subjt:  EKKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE
        NLRMP GYQPPKFQQFDGKGNPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE+I+SWE
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE

TrEMBL top hitse value%identityAlignment
A0A5D3BY54 Ty3-gypsy retrotransposon protein1.5e-7455.93Show/hide
Query:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SKK  S  + ASN Y GP+TRS SKG+    D+  + VA  + K L E+ KA IVIK+NPL+D S  + +  K+  + D+MSVMMAD+ P+ +MAE+E
Subjt:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRIDN
        +KIN LMKA+E++D EI  ++ Q+++R+TAES+ TP                                 DMI NSIR QYGGP Q   MYSK YTKRIDN
Subjt:  KKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRIDN

Query:  LRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE
        LRMP GYQPPKFQQF+GKGNPKQHIAHF ETCENAG+RGD LV+QFV++LKGNAF+WYTDLEPE IDSWE
Subjt:  LRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE

A0A5D3CD35 Ty3-gypsy retrotransposon protein1.5e-7154.81Show/hide
Query:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SKK  S  + AS+ Y GP+T SHSKG+    D+  + VA  + K L E+ K  IVIK+NPL+D    A +  K+  + D+M VMMAD+  + +MA++E
Subjt:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRIDN
        KKIN LMKAME+ D EI  ++ Q+++R+TAES+ TP                                 DMI NSIR QYGGP Q   MYSKPYTKRIDN
Subjt:  KKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRIDN

Query:  LRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE
        LRMP GYQPPKFQQFDGKGNPKQHIAHFVETC NAG+RGD LV+QFVR+LKGNAF+WYT+LE E ID+WE
Subjt:  LRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE

A0A5D3DHB7 Ty3-gypsy retrotransposon protein8.2e-7361.76Show/hide
Query:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SKKV S    A + Y  P+TRS SKG+    D+  + VA  + K L E+ KA IVIK+NPL+D S  A N  K   + ++MSVMMAD+  + +M E+E
Subjt:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KKINLLMKAMEDKDLEIAYIKSQIQSRDTAES-NHTPDMIMNSIRTQYGGPSQNPLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETC
        +KIN LMK +E++D EI  ++ Q+++R+ AES     DMI+NSIRTQYGGP Q   MYSKPYTKR DNLR+P GYQPPKFQQFDGKGNPKQHIAHFVETC
Subjt:  KKINLLMKAMEDKDLEIAYIKSQIQSRDTAES-NHTPDMIMNSIRTQYGGPSQNPLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETC

Query:  ENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE
        ENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE IDSWE
Subjt:  ENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE

A0A5D3DIN4 Ty3-gypsy retrotransposon protein1.0e-7055.19Show/hide
Query:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SKKV S  +AAS+ YIG VT+SH K      ++        L +L+ E+ K +I+I+DNPLF+ S PA N   +  + +++SVMM DV  + +M E+E
Subjt:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRIDN
        KKIN LMK +E++D EIA +K Q+++ +TAES+ TP                                 DMI+NSIR QYGGPSQ   MYSKPYTKRIDN
Subjt:  KKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP---------------------------------DMIMNSIRTQYGGPSQNPLMYSKPYTKRIDN

Query:  LRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE
        LRMP GYQPPKFQQFDGKGNPKQHIAHFVE CENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE IDSWE
Subjt:  LRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE

A0A5D3DXA8 Ty3-gypsy retrotransposon protein7.6e-7157.26Show/hide
Query:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SKKV S  + AS+ Y GP+T S  KG+    D+  + VA  + K L E+ KA IVIK+NPL+D S  A +  K+  + D+MS+MMAD+  + +MAE+E
Subjt:  MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP-----------DMIMNSIRTQYGGPSQNPLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPK
        +KIN LMK +E+++ EI  ++ Q+ +R+TAES+ TP           DMI NSI+ QYGGP Q    YSK YTKRID+LRMP GYQPPKFQQFD KGNPK
Subjt:  KKINLLMKAMEDKDLEIAYIKSQIQSRDTAESNHTP-----------DMIMNSIRTQYGGPSQNPLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPK

Query:  QHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE
        QHIAHF+ETCE AG+RG  LV+QFVR+LKGNAF+WYTDLEPE IDSWE
Subjt:  QHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATCAAAGAAAGTTACATCAACTGTTGCTGCTGCAAGCAACATCTACATAGGGCCGGTAACTCGTAGTCATTCCAAAGGGGTCGAGACAAGCGATGATCGAACTCC
TGATGCAGTGGCAAGCCACCTCACCAAATTACTGAATGAAGCTTACAAAGCTAAGATTGTCATCAAAGACAACCCCTTGTTTGACCAATCAGCTCCTGCTCCAAATCCAC
TGAAGGAGACGCTAAATCAAGATATAATGTCAGTCATGATGGCTGATGTAGACCCTGATGAAAGTATGGCGGAAGTGGAGAAAAAAATCAATCTCCTGATGAAGGCGATG
GAAGACAAAGATCTTGAAATCGCCTACATCAAAAGTCAAATTCAAAGTAGGGATACAGCTGAATCCAACCACACCCCTGACATGATTATGAACTCTATCAGAACTCAATA
CGGTGGACCTAGTCAAAATCCTCTCATGTACTCCAAACCATACACCAAGAGGATTGATAACCTGAGGATGCCCACAGGGTACCAACCTCCAAAATTTCAACAGTTCGACG
GAAAGGGCAACCCAAAGCAACACATTGCACATTTCGTTGAAACCTGCGAAAATGCAGGGACGCGTGGTGACCTCCTGGTGAAGCAATTCGTGCGTACCTTGAAAGGAAAT
GCTTTTGACTGGTACACCGACTTAGAGCCAGAAACAATCGATAGTTGGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAATCAAAGAAAGTTACATCAACTGTTGCTGCTGCAAGCAACATCTACATAGGGCCGGTAACTCGTAGTCATTCCAAAGGGGTCGAGACAAGCGATGATCGAACTCC
TGATGCAGTGGCAAGCCACCTCACCAAATTACTGAATGAAGCTTACAAAGCTAAGATTGTCATCAAAGACAACCCCTTGTTTGACCAATCAGCTCCTGCTCCAAATCCAC
TGAAGGAGACGCTAAATCAAGATATAATGTCAGTCATGATGGCTGATGTAGACCCTGATGAAAGTATGGCGGAAGTGGAGAAAAAAATCAATCTCCTGATGAAGGCGATG
GAAGACAAAGATCTTGAAATCGCCTACATCAAAAGTCAAATTCAAAGTAGGGATACAGCTGAATCCAACCACACCCCTGACATGATTATGAACTCTATCAGAACTCAATA
CGGTGGACCTAGTCAAAATCCTCTCATGTACTCCAAACCATACACCAAGAGGATTGATAACCTGAGGATGCCCACAGGGTACCAACCTCCAAAATTTCAACAGTTCGACG
GAAAGGGCAACCCAAAGCAACACATTGCACATTTCGTTGAAACCTGCGAAAATGCAGGGACGCGTGGTGACCTCCTGGTGAAGCAATTCGTGCGTACCTTGAAAGGAAAT
GCTTTTGACTGGTACACCGACTTAGAGCCAGAAACAATCGATAGTTGGGAGTAG
Protein sequenceShow/hide protein sequence
MQSKKVTSTVAAASNIYIGPVTRSHSKGVETSDDRTPDAVASHLTKLLNEAYKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKKINLLMKAM
EDKDLEIAYIKSQIQSRDTAESNHTPDMIMNSIRTQYGGPSQNPLMYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGN
AFDWYTDLEPETIDSWE