; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001413 (gene) of Snake gourd v1 genome

Gene IDTan0001413
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionE3 ubiquitin-protein ligase RHA2B-like
Genome locationLG03:74396221..74398597
RNA-Seq ExpressionTan0001413
SyntenyTan0001413
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0016874 - ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036272.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa]2.3e-7893.71Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFV+LIRTIFG RPNADKRVITTAQFLKLIE+KNPT RFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH-ESGYR
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH  S YR
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH-ESGYR

XP_008440648.1 PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]3.1e-7893.71Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFV+LIRTIFG RPNADKRVITTAQFLKLIE+KNPT RFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH--ESGY
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH  ES Y
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH--ESGY

XP_022132528.1 E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]2.6e-7792.81Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFV+LIRTIFG RP ADKRVITT Q+ KLIEE+NPT RFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH

XP_022963436.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata]4.0e-7894.77Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE V+L+RTIFG RPN DKRVI TAQFLKLIEEKNPT RFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH

XP_038883588.1 E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]8.0e-7996.08Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFV+LIRTIFG RPNADKRV+TTAQFLKLIEEKNPT RFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH

TrEMBL top hitse value%identityAlignment
A0A0A0KM08 RING-type domain-containing protein1.3e-7794.12Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFV+LIRTIFG RPN+DKRVITTAQF KLIE+KNPT RFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH

A0A1S3B160 probable E3 ubiquitin-protein ligase RHA2B1.5e-7893.71Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFV+LIRTIFG RPNADKRVITTAQFLKLIE+KNPT RFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH--ESGY
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH  ES Y
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH--ESGY

A0A5A7SYH1 Putative E3 ubiquitin-protein ligase RHA2B1.1e-7893.71Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFV+LIRTIFG RPNADKRVITTAQFLKLIE+KNPT RFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH-ESGYR
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH  S YR
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH-ESGYR

A0A6J1BWI1 E3 ubiquitin-protein ligase RHA2B-like1.3e-7792.81Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFV+LIRTIFG RP ADKRVITT Q+ KLIEE+NPT RFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH

A0A6J1HG49 E3 ubiquitin-protein ligase RHA2B-like isoform X11.9e-7894.77Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE V+L+RTIFG RPN DKRVI TAQFLKLIEEKNPT RFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH

SwissProt top hitse value%identityAlignment
Q0VD51 E3 ubiquitin-protein ligase RNF139.7e-1150Show/hide
Query:  DQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP
        D CA+CL E+E+G+K+R L C+H +H  C+D WL     TCP+C+ KV+P
Subjt:  DQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP

Q8LPN7 E3 ubiquitin-protein ligase RING1-like1.5e-1143.94Show/hide
Query:  PTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        PT + +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

Q90972 E3 ubiquitin-protein ligase RNF139.7e-1150Show/hide
Query:  DQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP
        D CA+CL E+E+G+K+R L C+H +H  C+D WL     TCP+C+ KV+P
Subjt:  DQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP

Q9ZT50 E3 ubiquitin-protein ligase RHA2A2.1e-1356.14Show/hide
Query:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR
        C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR

Q9ZU51 E3 ubiquitin-protein ligase RHA2B5.0e-1540.59Show/hide
Query:  LLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL
        LL  F   +R++  F P++   V+ T+    L ++ N    FS + + + A  C VCLS+ + GE+VRKL C H FHK CL+ WL+     CPLCRS +L
Subjt:  LLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL

Query:  P
        P
Subjt:  P

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A1.5e-1456.14Show/hide
Query:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR
        C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR

AT2G01150.1 RING-H2 finger protein 2B3.5e-1640.59Show/hide
Query:  LLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL
        LL  F   +R++  F P++   V+ T+    L ++ N    FS + + + A  C VCLS+ + GE+VRKL C H FHK CL+ WL+     CPLCRS +L
Subjt:  LLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL

Query:  P
        P
Subjt:  P

AT2G27940.1 RING/U-box superfamily protein1.5e-1132.48Show/hide
Query:  VLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIV
        V++   + FR   D + + +           P  R++ K      + C +CLS+FEEGE V+ +  C H FH DC+D WL   + TCPLCRS  L  D  
Subjt:  VLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIV

Query:  AGYHRLRDRVEYDGSDE
         G   +++  + D ++E
Subjt:  AGYHRLRDRVEYDGSDE

AT3G19950.1 RING/U-box superfamily protein1.1e-1243.94Show/hide
Query:  PTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        PT + +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

AT5G45290.1 RING/U-box superfamily protein4.1e-1243.08Show/hide
Query:  KITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYH
        K  S    QC +CL E+EE + +R L C+H FHK C+D WLK     CPLCR  +   D  +  H
Subjt:  KITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCCGTCTTCTTTACCCTTTTACTTCTCGAATTCGTTGTTCTCATTCGCACGATCTTCGGGTTTAG
ACCTAACGCCGACAAGCGCGTGATCACGACGGCTCAGTTTTTGAAACTGATCGAGGAGAAGAATCCGACGACTCGATTCTCCAATAAGATCACCTCGAGTCCCGCCGATC
AGTGCGCTGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGTCTCGATAATTGGTTGAAACTCTGTTTC
GCTACCTGTCCACTTTGCCGGAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCACAGGCTGCGGGACCGTGTAGAATACGACGGCAGCGACGAGGAGCTCATCTT
TTTGTTATCGGCATTACATGAATCAGGTTATCGGTGA
mRNA sequenceShow/hide mRNA sequence
AAAAGAAAAAGAGAAAGAAATCAGAGAATATAGTGTAGGCTGAAATGTTCAGGGAGAATATATAATTAAAAGAATTGAATTATTGGAATCCATCCGTCCATCTCTATCCG
GCAGCCATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCCGTCTTCTTTACCCTTTTACTTCTCGAATTCGTTGTTCTCATTCGCACGATCTTCGG
GTTTAGACCTAACGCCGACAAGCGCGTGATCACGACGGCTCAGTTTTTGAAACTGATCGAGGAGAAGAATCCGACGACTCGATTCTCCAATAAGATCACCTCGAGTCCCG
CCGATCAGTGCGCTGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGTCTCGATAATTGGTTGAAACTC
TGTTTCGCTACCTGTCCACTTTGCCGGAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCACAGGCTGCGGGACCGTGTAGAATACGACGGCAGCGACGAGGAGCT
CATCTTTTTGTTATCGGCATTACATGAATCAGGTTATCGGTGAGAACAAGCAAAAGCAGCTTTTAGATGGTTGAGCCAAATACCATTTGAACTGTTCTTGAGAATGAGTT
TAAAACATATGGCATTTCCTATCCCCAAATGTTTCTGGAGCTACAGTTCTTCGCACGATAAATTGATTTGTCCTGTATGTTGGACGATTGCAATAAGTTGGCAGGGTATA
GGCAAAGTCTCGTGGTGGAGCAGCTAAGGGTAATTGCAAAAGATTTGACATTTATTGTCAGATTCAAGAAAGTAGATAAACGACTTCAATAGTAATAATAGTACCAAACC
AAAAGAACACATATGGGGGAGATGAATTCTTTTCCTTATCCATTTGGGAAATGGGGTGGTTGGTTGAGTTCTTTTTTCTTTTCAGTTTGTTGCACATTCTTGTTGGTTGC
CCCATTCTTAATCCCTGAATGTAAAATCAAAATATTATTAAAATTTTTCTCTTATAAATCAAATCAAACCCCATAAAACTGCCCTTCACATTATTAGCAGGACCTTCAAC
TAATAAATTCTCCAAATGGAGGTTCTGTTTGGTATTTTCCTTAGGTCATGAGTTTGGTAAGATGCAACTGAACCCATTGAAAAATTAACCAAGACGAGGGCTGCTGGATT
TTTCATTTTGTTAGTGGTGCTTTGAATTCTACTCGGTTTTTATGAGGTTAATTAGTC
Protein sequenceShow/hide protein sequence
MGALSEFFSHLHTMTAVFFTLLLLEFVVLIRTIFGFRPNADKRVITTAQFLKLIEEKNPTTRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCF
ATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHESGYR