; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001414 (gene) of Snake gourd v1 genome

Gene IDTan0001414
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG02:89062235..89064267
RNA-Seq ExpressionTan0001414
SyntenyTan0001414
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032923.1 polyprotein [Cucumis melo var. makuwa]6.6e-4666.92Show/hide
Query:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR FYE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY
        FKP +Y+Y DY KAWY VFW  +YNHS W+
Subjt:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY

KAA0041673.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.6e-4666.92Show/hide
Query:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT + +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR FYE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY
        FKP +Y+Y DY KAWY VFW ++YNHS W+
Subjt:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.9e-4666.92Show/hide
Query:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR FYE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY
        FKP +Y+Y DY KAWY VFW ++YNHS W+
Subjt:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.9e-4666.92Show/hide
Query:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR FYE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY
        FKP +Y+Y DY KAWY VFW ++YNHS W+
Subjt:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY

TYK28077.1 polyprotein [Cucumis melo var. makuwa]6.6e-4666.92Show/hide
Query:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR FYE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY
        FKP +Y+Y DY KAWY VFW  +YNHS W+
Subjt:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY

TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein3.2e-4666.92Show/hide
Query:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR FYE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY
        FKP +Y+Y DY KAWY VFW  +YNHS W+
Subjt:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY

A0A5A7UVN1 Retrotransposable element Tf21.9e-4666.92Show/hide
Query:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR FYE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY
        FKP +Y+Y DY KAWY VFW ++YNHS W+
Subjt:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY

A0A5A7V6D1 Retrotransposable element Tf21.9e-4666.92Show/hide
Query:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR FYE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY
        FKP +Y+Y DY KAWY VFW ++YNHS W+
Subjt:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY

A0A5D3C4Q3 Retrotransposable element Tf23.2e-4666.92Show/hide
Query:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT + +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR FYE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY
        FKP +Y+Y DY KAWY VFW ++YNHS W+
Subjt:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY

A0A5D3DW87 Polyprotein3.2e-4666.92Show/hide
Query:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN
        Y TKT++ +  IEPEFDGP+ QE C Q++P GF F+PED+ KTR FYE+ILVD+KSAEITHVPD+NDP++II+SKL+IFRVLTPS+W QGM V RKFS  
Subjt:  YHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRN

Query:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY
        FKP +Y+Y DY KAWY VFW  +YNHS W+
Subjt:  FKPQTYSYHDYMKAWYNVFWYESYNHSCWY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTATCATACAAAAACTTCTTTGGAAGAAGCCGTCATTGAACCAGAATTTGACGGCCCCACTCCACAAGAGGCATGTTGCCAATTATATCCTCGAGGCTTCCAATT
TGTGCCCGAAGATATTCTAAAAACTAGGAAGTTCTATGAGTTCATCCTAGTTGATACAAAATCTGCGGAGATTACTCATGTACCGGACAGAAATGACCCGGCAAGAATAA
TCTTTTCAAAATTAAAAATTTTTAGGGTCTTGACTCCATCCCACTGGCCTCAGGGGATGTCAGTCCCAAGAAAATTTTCTAGGAATTTTAAACCCCAAACATATAGCTAC
CATGACTACATGAAAGCATGGTACAATGTGTTTTGGTATGAATCATACAACCATTCTTGTTGGTACAATCATGCTATTAAATTTTCGTCGACATTTCCATTATATCGTAA
AACATTGATGAAATATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTATCATACAAAAACTTCTTTGGAAGAAGCCGTCATTGAACCAGAATTTGACGGCCCCACTCCACAAGAGGCATGTTGCCAATTATATCCTCGAGGCTTCCAATT
TGTGCCCGAAGATATTCTAAAAACTAGGAAGTTCTATGAGTTCATCCTAGTTGATACAAAATCTGCGGAGATTACTCATGTACCGGACAGAAATGACCCGGCAAGAATAA
TCTTTTCAAAATTAAAAATTTTTAGGGTCTTGACTCCATCCCACTGGCCTCAGGGGATGTCAGTCCCAAGAAAATTTTCTAGGAATTTTAAACCCCAAACATATAGCTAC
CATGACTACATGAAAGCATGGTACAATGTGTTTTGGTATGAATCATACAACCATTCTTGTTGGTACAATCATGCTATTAAATTTTCGTCGACATTTCCATTATATCGTAA
AACATTGATGAAATATTAA
Protein sequenceShow/hide protein sequence
MSYHTKTSLEEAVIEPEFDGPTPQEACCQLYPRGFQFVPEDILKTRKFYEFILVDTKSAEITHVPDRNDPARIIFSKLKIFRVLTPSHWPQGMSVPRKFSRNFKPQTYSY
HDYMKAWYNVFWYESYNHSCWYNHAIKFSSTFPLYRKTLMKY