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Tan0001440 (gene) of Snake gourd v1 genome

Gene IDTan0001440
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG05:55390951..55391211
RNA-Seq ExpressionTan0001440
SyntenyTan0001440
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-1971.23Show/hide
Query:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD
        M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG VIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-1971.23Show/hide
Query:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD
        M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG VIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD

XP_038876370.1 uncharacterized protein LOC120068812, partial [Benincasa hispida]2.7e-2073.97Show/hide
Query:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD
        MVTAKEIM SLQA+F QPSSS  +DA+K+VYN RMKEG +VREHVLDMMVHFN+ EVN  V++EKSQV FIM+
Subjt:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD

XP_038880476.1 uncharacterized protein LOC120072136 [Benincasa hispida]7.1e-2173.97Show/hide
Query:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD
        MV AKEIM SLQA+F QPSSS  +DA+KYVYNFRMKEG +VREHVLDMMVHFN+ EVNG V++EK+Q  FIM+
Subjt:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD

XP_038895904.1 uncharacterized protein LOC120084074 [Benincasa hispida]6.0e-2066.67Show/hide
Query:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMDLFRRV
        MVTAKEIM SLQAMFEQ S S+ ++ LKY+YN  MKE  S+REHVLDMMV  NVA+ NG+VIDEKSQV+FIM+  +++
Subjt:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMDLFRRV

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein8.5e-2071.23Show/hide
Query:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD
        M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG VIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD

A0A5A7TU93 Gag/pol protein8.5e-2071.23Show/hide
Query:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD
        M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG VIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD

A0A5A7TWB9 Gag/pol protein8.5e-2071.23Show/hide
Query:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD
        M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG VIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD

A0A5A7V4M1 Gag/pol protein8.5e-2071.23Show/hide
Query:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD
        M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG VIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD

A0A5D3CPJ6 Gag/pol protein8.5e-2071.23Show/hide
Query:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD
        M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG VIDE SQV+FI++
Subjt:  MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCACCGCTAAGGAGATCATGGGATCCTTACAGGCGATGTTCGAACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTTTCGTATGAAGGA
GGGGGCCTCTGTTAGGGAACATGTACTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATC
TCTTCCGAAGAGTTTCCTGTCATTCCGCACTAATGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCACCGCTAAGGAGATCATGGGATCCTTACAGGCGATGTTCGAACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTTTCGTATGAAGGA
GGGGGCCTCTGTTAGGGAACATGTACTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATC
TCTTCCGAAGAGTTTCCTGTCATTCCGCACTAATGCAGTGA
Protein sequenceShow/hide protein sequence
MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMDLFRRVSCHSALMQ