; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001456 (gene) of Snake gourd v1 genome

Gene IDTan0001456
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG05:79866915..79867235
RNA-Seq ExpressionTan0001456
SyntenyTan0001456
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033263.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1558.57Show/hide
Query:  MLSNAYSGFGWNKELECVDVEKEIFDAWGHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN
        M   A SGFGWN E +C+  EKE+FD W HPAAKGL NK FP+YD+LT VFG+ +A G  AET   + SN
Subjt:  MLSNAYSGFGWNKELECVDVEKEIFDAWGHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN

KAA0065929.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-1558.33Show/hide
Query:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN
        M   A SGFGWN E++C+  EKE+FD W   HPAAKGL NKPFP+YD+LT VFG+ +A G  AET   + SN
Subjt:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN

XP_038887032.1 uncharacterized protein LOC120077200 [Benincasa hispida]1.2e-1760.26Show/hide
Query:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSNTAEQIE
        MLSNAYSGFGWN E + V+VEKE+FD W   HP AKGL +KPFPHYD+L+IVFGK +A+G  ++T     S T E +E
Subjt:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSNTAEQIE

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]8.9e-1858.33Show/hide
Query:  SGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSNTAEQIE
        SGF WN+E +CV VE+EIFD W   HP AKG+WNKPFPHYDDL+ VFGKY+A+G ++E    +T+N   + E
Subjt:  SGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSNTAEQIE

XP_038904322.1 uncharacterized protein LOC120090676 [Benincasa hispida]1.9e-1555.56Show/hide
Query:  SGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSNTAEQIE
        SGFGWN+E +CV VE+EIFD W   HP AKG+WNKPF HYDDL+ VFGK +A+G ++E    + +N   + E
Subjt:  SGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSNTAEQIE

TrEMBL top hitse value%identityAlignment
A0A5A7SS54 Retrotransposon protein6.9e-1658.57Show/hide
Query:  MLSNAYSGFGWNKELECVDVEKEIFDAWGHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN
        M   A SGFGWN E +C+  EKE+FD W HPAAKGL NK FP+YD+LT VFG+ +A G  AET   + SN
Subjt:  MLSNAYSGFGWNKELECVDVEKEIFDAWGHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN

A0A5A7TGP1 Retrotransposon protein9.0e-1659.72Show/hide
Query:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN
        M   A SGFGWN E +C+ VEKE+FD W   HPAAKGL NKPFP+YD+LT VFG+ +A G  AET   + SN
Subjt:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN

A0A5A7UNC0 Retrotransposon protein1.2e-1558.33Show/hide
Query:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN
        M   A SGFGWN E +C+  EKE+FD W   HPAAKGL NKPFP+YD+LT VFG+ +A G  AET   + SN
Subjt:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN

A0A5A7VKT2 Retrotransposon protein9.0e-1658.33Show/hide
Query:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN
        M   A SGFGWN E++C+  EKE+FD W   HPAAKGL NKPFP+YD+LT VFG+ +A G  AET   + SN
Subjt:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN

A0A5D3BEV4 Retrotransposon protein1.5e-1558.33Show/hide
Query:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN
        M   A SGFGWN E +C+  EKE+FD W   HPAAKGL NKPFP+YD+LT VFG+ +A G  AET   + SN
Subjt:  MLSNAYSGFGWNKELECVDVEKEIFDAW--GHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAGTAATGCTTATAGTGGATTTGGTTGGAACAAAGAGTTGGAATGTGTTGATGTGGAGAAAGAGATTTTTGATGCTTGGGGTCATCCTGCTGCCAAAGGGTTGTG
GAACAAGCCATTCCCACACTATGATGATTTGACAATCGTGTTTGGTAAATATCAAGCCATGGGGTTAGCCGCAGAGACACTCATGAAGATAACCTCTAATACTGCTGAAC
AGATTGAGAGGAGATCCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAGTAATGCTTATAGTGGATTTGGTTGGAACAAAGAGTTGGAATGTGTTGATGTGGAGAAAGAGATTTTTGATGCTTGGGGTCATCCTGCTGCCAAAGGGTTGTG
GAACAAGCCATTCCCACACTATGATGATTTGACAATCGTGTTTGGTAAATATCAAGCCATGGGGTTAGCCGCAGAGACACTCATGAAGATAACCTCTAATACTGCTGAAC
AGATTGAGAGGAGATCCAATTGA
Protein sequenceShow/hide protein sequence
MLSNAYSGFGWNKELECVDVEKEIFDAWGHPAAKGLWNKPFPHYDDLTIVFGKYQAMGLAAETLMKITSNTAEQIERRSN