| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0055498.1 gag-pol fusion protein [Cucumis melo var. makuwa] | 2.3e-75 | 48.21 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
+ESMYFN VW+LVDQPDGVKPIGCKWIYKRKRG DGKV+TFKARLVAKG+T+VEGVDYEETFSPVAM+KSI L +I AY+DYE+W+M VKT F NG L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQPKG------------------SLPKAKSKEFV-------------------GFID-----IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVED
ETIYM QP+G + +FV +ID +NSK+GLLPFRH V LSK+QCPKTPQDVE+
Subjt: ETIYMDQPKG------------------SLPKAKSKEFV-------------------GFID-----IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVED
Query: MRRIPYASAVGSLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVV
MR IPYASAVGSL+Y M P I+ GYTDSDFQTD+DSRKSTLG F NGG V
Subjt: MRRIPYASAVGSLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVV
Query: VYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
V+ + + + + + + KEA+WLR F+
Subjt: VYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
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| KAA0059546.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] | 6.0e-76 | 48.21 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
+ES+YFN VW+LVDQPDGVKPIGCKWIYKRKRG DGKV+TFKARLVAKG+T+VEGVDYEETFSPVAM+KSI L +I AY+DYE+W+M VKT F NG L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQPKG------------------SLPKAKSKEFV-------------------GFID-----IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVED
ETIYM QP+G + +FV +ID +NSK+GLLPFRHGV LSK+QCPKTPQDVE+
Subjt: ETIYMDQPKG------------------SLPKAKSKEFV-------------------GFID-----IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVED
Query: MRRIPYASAVGSLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVV
MR IPYASAVGSL+YAM P I+ GYTDSDFQTD+DSRKST G F NGG V
Subjt: MRRIPYASAVGSLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVV
Query: VYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
V+++ + + + + + KEA+WLR F+
Subjt: VYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
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| KAA0059678.1 gag/pol protein [Cucumis melo var. makuwa] | 2.6e-71 | 47.08 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
+ESMYFN VWELVD P+GVKPIGCKWIYKRKR GKV+TFKARLVAKG+T+ EG DYEETFSPVA++KSI +I +YDYE+W+M VK F NG L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQPKG---------------------SLPKAKSKEFVGFID----------IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVEDMRRIPYASAVG
E+I+M QP+G + K K V ++D +NSKKGLLPFRH VHLSK+QCPKTPQ+VEDMR IPY SAVG
Subjt: ETIYMDQPKG---------------------SLPKAKSKEFVGFID----------IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVEDMRRIPYASAVG
Query: SLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALL
SL+Y M P I+ GYTDSDFQTDKDSRKST F NGG VV+ + + +
Subjt: SLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALL
Query: IPLWKRSMLRLVK-RKEAIWLRKFM
+ + K KEA+WLRKF+
Subjt: IPLWKRSMLRLVK-RKEAIWLRKFM
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| KAA0064189.1 gag/pol protein [Cucumis melo var. makuwa] | 7.6e-71 | 52.73 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
M+SMYFN VWELVD P+GVKPIGCKWIYKRKR GKV+TFKARLVAKG+T+ EGVDYEETFSPVAM+KSI L +I +YDYE+W+M VKT F NG L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQPKGSLPKAKSKEFVGFIDIRCENSKKGLLPF--RHGVHLSKDQCPKTPQDVEDMRRIPYASAVGSLIYAMRVLGP------------------
E+I+M QP+ + + + ++ V +++ K+ + RHGVHLSK+QCPKTPQ+VEDMRRIPYASAVGSL+YAM P
Subjt: ETIYMDQPKGSLPKAKSKEFVGFIDIRCENSKKGLLPF--RHGVHLSKDQCPKTPQDVEDMRRIPYASAVGSLIYAMRVLGP------------------
Query: -----TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
I+ YTDSDFQTDKDSRKS G F N G +V+ + + + + + + KEA+WLRKF+
Subjt: -----TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
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| TYK02840.1 gag/pol protein [Cucumis melo var. makuwa] | 2.6e-71 | 53.09 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
MESMYFN VWELVD P+GVKPIGCKWIYKRKR GKV+TFKARLVAKG+T+ EGVDYEETFSPVAM+KSI L +I +YDYE+W+M VKT F NG L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQPKGSLPKAKSKEFVGFIDIRCENSKKGLLPF--RHGVHLSKDQCPKTPQDVEDMRRIPYASAVGSLIYAMRVLGP------------------
E+I+M QP+ + + + ++ V +++ K+ + RHGVHLSK+QCPKTPQ+VEDMRRIPYASAVGSL+YAM P
Subjt: ETIYMDQPKGSLPKAKSKEFVGFIDIRCENSKKGLLPF--RHGVHLSKDQCPKTPQDVEDMRRIPYASAVGSLIYAMRVLGP------------------
Query: -----TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
I+ YTDSDFQTDKDSRKS G F N G +V+ + + + + + + KEA+WLRKF+
Subjt: -----TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7UKD1 Gag-pol fusion protein | 1.1e-75 | 48.21 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
+ESMYFN VW+LVDQPDGVKPIGCKWIYKRKRG DGKV+TFKARLVAKG+T+VEGVDYEETFSPVAM+KSI L +I AY+DYE+W+M VKT F NG L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQPKG------------------SLPKAKSKEFV-------------------GFID-----IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVED
ETIYM QP+G + +FV +ID +NSK+GLLPFRH V LSK+QCPKTPQDVE+
Subjt: ETIYMDQPKG------------------SLPKAKSKEFV-------------------GFID-----IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVED
Query: MRRIPYASAVGSLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVV
MR IPYASAVGSL+Y M P I+ GYTDSDFQTD+DSRKSTLG F NGG V
Subjt: MRRIPYASAVGSLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVV
Query: VYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
V+ + + + + + + KEA+WLR F+
Subjt: VYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
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| A0A5A7UWW4 Gag/pol protein | 1.3e-71 | 47.08 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
+ESMYFN VWELVD P+GVKPIGCKWIYKRKR GKV+TFKARLVAKG+T+ EG DYEETFSPVA++KSI +I +YDYE+W+M VK F NG L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQPKG---------------------SLPKAKSKEFVGFID----------IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVEDMRRIPYASAVG
E+I+M QP+G + K K V ++D +NSKKGLLPFRH VHLSK+QCPKTPQ+VEDMR IPY SAVG
Subjt: ETIYMDQPKG---------------------SLPKAKSKEFVGFID----------IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVEDMRRIPYASAVG
Query: SLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALL
SL+Y M P I+ GYTDSDFQTDKDSRKST F NGG VV+ + + +
Subjt: SLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALL
Query: IPLWKRSMLRLVK-RKEAIWLRKFM
+ + K KEA+WLRKF+
Subjt: IPLWKRSMLRLVK-RKEAIWLRKFM
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| A0A5A7UZE3 Retrotransposon protein, putative, Ty1-copia subclass | 2.9e-76 | 48.21 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
+ES+YFN VW+LVDQPDGVKPIGCKWIYKRKRG DGKV+TFKARLVAKG+T+VEGVDYEETFSPVAM+KSI L +I AY+DYE+W+M VKT F NG L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQPKG------------------SLPKAKSKEFV-------------------GFID-----IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVED
ETIYM QP+G + +FV +ID +NSK+GLLPFRHGV LSK+QCPKTPQDVE+
Subjt: ETIYMDQPKG------------------SLPKAKSKEFV-------------------GFID-----IRCENSKKGLLPFRHGVHLSKDQCPKTPQDVED
Query: MRRIPYASAVGSLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVV
MR IPYASAVGSL+YAM P I+ GYTDSDFQTD+DSRKST G F NGG V
Subjt: MRRIPYASAVGSLIYAMRVLGP--------------------------------------------TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVV
Query: VYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
V+++ + + + + + KEA+WLR F+
Subjt: VYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
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| A0A5A7VF82 Gag/pol protein | 3.7e-71 | 52.73 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
M+SMYFN VWELVD P+GVKPIGCKWIYKRKR GKV+TFKARLVAKG+T+ EGVDYEETFSPVAM+KSI L +I +YDYE+W+M VKT F NG L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQPKGSLPKAKSKEFVGFIDIRCENSKKGLLPF--RHGVHLSKDQCPKTPQDVEDMRRIPYASAVGSLIYAMRVLGP------------------
E+I+M QP+ + + + ++ V +++ K+ + RHGVHLSK+QCPKTPQ+VEDMRRIPYASAVGSL+YAM P
Subjt: ETIYMDQPKGSLPKAKSKEFVGFIDIRCENSKKGLLPF--RHGVHLSKDQCPKTPQDVEDMRRIPYASAVGSLIYAMRVLGP------------------
Query: -----TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
I+ YTDSDFQTDKDSRKS G F N G +V+ + + + + + + KEA+WLRKF+
Subjt: -----TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
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| A0A5D3BUN8 Gag/pol protein | 1.3e-71 | 53.09 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
MESMYFN VWELVD P+GVKPIGCKWIYKRKR GKV+TFKARLVAKG+T+ EGVDYEETFSPVAM+KSI L +I +YDYE+W+M VKT F NG L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQPKGSLPKAKSKEFVGFIDIRCENSKKGLLPF--RHGVHLSKDQCPKTPQDVEDMRRIPYASAVGSLIYAMRVLGP------------------
E+I+M QP+ + + + ++ V +++ K+ + RHGVHLSK+QCPKTPQ+VEDMRRIPYASAVGSL+YAM P
Subjt: ETIYMDQPKGSLPKAKSKEFVGFIDIRCENSKKGLLPF--RHGVHLSKDQCPKTPQDVEDMRRIPYASAVGSLIYAMRVLGP------------------
Query: -----TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
I+ YTDSDFQTDKDSRKS G F N G +V+ + + + + + + KEA+WLRKF+
Subjt: -----TYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALLIPLWKRSMLRLVK-RKEAIWLRKFM
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 3.9e-17 | 40.38 | Show/hide |
Query: NFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLDETIYMD
N W + +P+ + +W++ K G +KARLVA+GFT+ +DYEETF+PVA + S + ++V Y+ +V +M VKT F NG L E IYM
Subjt: NFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLDETIYMD
Query: QPKG
P+G
Subjt: QPKG
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.0e-29 | 24.75 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
MES+ N ++LV+ P G +P+ CKW++K K+ D K+ +KARLV KGF + +G+D++E FSPV + SI + ++ A D EV ++ VKT F +G L+
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLD
Query: ETIYMDQP------------------------------------------------------------------------------------KGSLPKA-
E IYM+QP KG L K+
Subjt: ETIYMDQP------------------------------------------------------------------------------------KGSLPKA-
Query: ------KSKEFVGFIDIR-----------------------CENSKKGLLPFRHGVHLSKDQCPKTPQDVEDMRRIPYASAVGSLIYAM-----------
+++ +G +R +N+K P + LSK CP T ++ +M ++PY+SAVGSL+YAM
Subjt: ------KSKEFVGFIDIR-----------------------CENSKKGLLPFRHGVHLSKDQCPKTPQDVEDMRRIPYASAVGSLIYAM-----------
Query: ----------------------RVL-----------GPTYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALLIPLWKRSMLRLVKR-KE
R L G I+ GYTD+D D D+RKS+ G F F+GG + +++ + + + + + + KE
Subjt: ----------------------RVL-----------GPTYIMHGYTDSDFQTDKDSRKSTLGVTFIFNGGVVVYEASSEDALLIPLWKRSMLRLVKR-KE
Query: AIWLRKFM
IWL++F+
Subjt: AIWLRKFM
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 1.0e-09 | 40.54 | Show/hide |
Query: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDL
++++ N W LV P +GCKW++K K DG + KARLVAKGF + EG+ + ET+SPV +I +
Subjt: MESMYFNFVWELVDQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDL
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 5.0e-17 | 38.53 | Show/hide |
Query: NFVWELVDQPDG-VKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLDETIYM
N W+LV P V +GC+WI+ +K DG + +KARLVAKG+ + G+DY ETFSPV SI + + + + ++ V F G L + +YM
Subjt: NFVWELVDQPDG-VKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLDETIYM
Query: DQPKGSLPK
QP G + K
Subjt: DQPKGSLPK
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 8.6e-17 | 38.53 | Show/hide |
Query: NFVWELV-DQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLDETIYM
N W+LV P V +GC+WI+ +K DG + +KARLVAKG+ + G+DY ETFSPV SI + + + + ++ V F G L + +YM
Subjt: NFVWELV-DQPDGVKPIGCKWIYKRKRGVDGKVRTFKARLVAKGFTEVEGVDYEETFSPVAMVKSIEDLTAIVAYYDYEVWRMGVKTTFTNGKLDETIYM
Query: DQPKGSLPK
QP G + K
Subjt: DQPKGSLPK
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