; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001542 (gene) of Snake gourd v1 genome

Gene IDTan0001542
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTetratricopeptide-like helical
Genome locationLG01:13823738..13824052
RNA-Seq ExpressionTan0001542
SyntenyTan0001542
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]3.7e-1654.46Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETEND-VPPHLLADENEDEDDENVTSTASIYAFPAAR----------KCDGTNGVLYCFPAMMCHFDQKIK
        MSVSLEALAMAGIDSNEW MDA+ W RN   E D VPPHLLADE +DED E VTST S Y F              K DG + +L  F ++        K
Subjt:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETEND-VPPHLLADENEDEDDENVTSTASIYAFPAAR----------KCDGTNGVLYCFPAMMCHFDQKIK

Query:  LMEKRASNGLNS
        ++EKRASNG+NS
Subjt:  LMEKRASNGLNS

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]5.9e-2261.68Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDENVTSTASIYAFPAA------RKCDGTNGVLYCFPAMMCHFDQKIKLMEKR
        MSVSLEALAMAGI SNEWAMDAE W RN E ENDVPPHLLAD  ED+DD+NVTST S Y+FP A      R+ DG    ++CF  ++C      K +EKR
Subjt:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDENVTSTASIYAFPAA------RKCDGTNGVLYCFPAMMCHFDQKIKLMEKR

Query:  ASNGLNS
        ASNG++S
Subjt:  ASNGLNS

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-2160.75Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDENVTSTASIYAFPAA------RKCDGTNGVLYCFPAMMCHFDQKIKLMEKR
        MSVSLEALAMAGI SNEWAMDAE W RN E ENDVPPHLLAD  ED+DD+NVTST S Y+FP A       + DG    ++CF  ++C      K +EKR
Subjt:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDENVTSTASIYAFPAA------RKCDGTNGVLYCFPAMMCHFDQKIKLMEKR

Query:  ASNGLNS
        ASNG++S
Subjt:  ASNGLNS

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]1.1e-1554.46Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETEND-VPPHLLADENEDEDDENVTSTASIYAFPAAR----------KCDGTNGVLYCFPAMMCHFDQKIK
        MSVSLEALAMAGIDSNEW MDA+ W RN   E D VPPHLLADE +DED E VTST S Y F              K DG   +L  F ++        K
Subjt:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETEND-VPPHLLADENEDEDDENVTSTASIYAFPAAR----------KCDGTNGVLYCFPAMMCHFDQKIK

Query:  LMEKRASNGLNS
        ++EKRASNG+NS
Subjt:  LMEKRASNGLNS

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.1e-1556.44Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDENVTSTASIYAFPAARKCDGTNGVLYCFPAMMCHFDQKIKLMEKRASNGLN
        MSVSLEALAMAGIDSNEWAMDAE W RN E E D+PPHLLADE+++ED+ +    A+       RK DG  GV  C P +M H     K+ EKR  N L+
Subjt:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDENVTSTASIYAFPAARKCDGTNGVLYCFPAMMCHFDQKIKLMEKRASNGLN

Query:  S
        S
Subjt:  S

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein1.1e-1051.52Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEAWGRN---IETENDVPPHLLADENEDEDDENVTSTASIYAFPAARKCDGTNGVLYCFPAMMCHFDQKIKLMEKRAS
        M VSLEALAMAGIDSNEWAMDAE W  N   +E ++ +PPHLLA    DED+EN+   A        RK DG    L  F A    +    K+MEKRAS
Subjt:  MSVSLEALAMAGIDSNEWAMDAEAWGRN---IETENDVPPHLLADENEDEDDENVTSTASIYAFPAARKCDGTNGVLYCFPAMMCHFDQKIKLMEKRAS

A0A0A0KWE7 Uncharacterized protein3.1e-1656.25Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETEND-VPPHLLADENEDED-DENV-TSTASIYAFPA--------ARKCDGTNGVLYCFPAMMCHFDQKIK
        MSVSLEALAMAGIDSNEWAMDAE W RN   E D VPPHLLADE +DED DE+V TST S Y FP          R C    G  +    + C      K
Subjt:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETEND-VPPHLLADENEDED-DENV-TSTASIYAFPA--------ARKCDGTNGVLYCFPAMMCHFDQKIK

Query:  LMEKRASNGLNS
        ++EKRASNG++S
Subjt:  LMEKRASNGLNS

A0A5A7TS68 Tetratricopeptide-like helical1.8e-1654.46Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETEND-VPPHLLADENEDEDDENVTSTASIYAFPAAR----------KCDGTNGVLYCFPAMMCHFDQKIK
        MSVSLEALAMAGIDSNEW MDA+ W RN   E D VPPHLLADE +DED E VTST S Y F              K DG + +L  F ++        K
Subjt:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETEND-VPPHLLADENEDEDDENVTSTASIYAFPAAR----------KCDGTNGVLYCFPAMMCHFDQKIK

Query:  LMEKRASNGLNS
        ++EKRASNG+NS
Subjt:  LMEKRASNGLNS

A0A5D3CZU0 Tetratricopeptide-like helical5.3e-1654.46Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETEND-VPPHLLADENEDEDDENVTSTASIYAFPAAR----------KCDGTNGVLYCFPAMMCHFDQKIK
        MSVSLEALAMAGIDSNEW MDA+ W RN   E D VPPHLLADE +DED E VTST S Y F              K DG   +L  F ++        K
Subjt:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETEND-VPPHLLADENEDEDDENVTSTASIYAFPAAR----------KCDGTNGVLYCFPAMMCHFDQKIK

Query:  LMEKRASNGLNS
        ++EKRASNG+NS
Subjt:  LMEKRASNGLNS

A0A6J1FX98 uncharacterized protein LOC1114478805.3e-1656.44Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDENVTSTASIYAFPAARKCDGTNGVLYCFPAMMCHFDQKIKLMEKRASNGLN
        MSVSLEALAMAGIDSNEWAMDAE W RN E E D+PPHLLADE+++ED+ +    A+       RK DG  GV  C P +M H     K+ EKR  N L+
Subjt:  MSVSLEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDENVTSTASIYAFPAARKCDGTNGVLYCFPAMMCHFDQKIKLMEKRASNGLN

Query:  S
        S
Subjt:  S

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein3.5e-0447.83Show/hide
Query:  LEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDE
        +EALAMAG+D  EW +  E W      E+ VP HLLAD+ ++E+ E
Subjt:  LEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCCATGGCGGGGATAGATTCCAATGAGTGGGCTATGGATGCTGAAGCATGGGGAAGAAATATCGAAACGGAGAACGACGTTCCACC
GCATTTATTAGCCGATGAAAACGAAGACGAAGACGATGAAAACGTAACGAGTACTGCCAGTATCTATGCGTTTCCAGCCGCCCGGAAATGCGACGGGACTAATGGTGTAC
TGTACTGCTTTCCGGCGATGATGTGCCATTTTGATCAGAAAATTAAACTCATGGAGAAGAGAGCTTCGAATGGCCTGAATTCTGAGGGTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCCATGGCGGGGATAGATTCCAATGAGTGGGCTATGGATGCTGAAGCATGGGGAAGAAATATCGAAACGGAGAACGACGTTCCACC
GCATTTATTAGCCGATGAAAACGAAGACGAAGACGATGAAAACGTAACGAGTACTGCCAGTATCTATGCGTTTCCAGCCGCCCGGAAATGCGACGGGACTAATGGTGTAC
TGTACTGCTTTCCGGCGATGATGTGCCATTTTGATCAGAAAATTAAACTCATGGAGAAGAGAGCTTCGAATGGCCTGAATTCTGAGGGTCTGTGA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAEAWGRNIETENDVPPHLLADENEDEDDENVTSTASIYAFPAARKCDGTNGVLYCFPAMMCHFDQKIKLMEKRASNGLNSEGL