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Tan0001548 (gene) of Snake gourd v1 genome

Gene IDTan0001548
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSWIM-type domain-containing protein
Genome locationLG03:28896076..28898201
RNA-Seq ExpressionTan0001548
SyntenyTan0001548
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046918.1 uncharacterized protein E6C27_scaffold230G00860 [Cucumis melo var. makuwa]7.6e-4155.8Show/hide
Query:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ
        V P+S  E++VVD    FLVKL+  SCSC  WD +EIPC  AL+V+R  N+N Y+FVS+YY++  LS+TYGG++ P+GNH +WS ++V  N LP + +R 
Subjt:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ

Query:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP
        AGRPRK+RIP IGE    +KCSRC R GHN RTC F P
Subjt:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP

TYJ96591.1 uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa]2.6e-4155.8Show/hide
Query:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ
        V P+S  E++VVD    FLVKL+  SCSC  WD +EIPC HAL+V+R  N+N Y+FVS+YY++  LS+TYGG++ P+GNH +WS + V  N LP + +R 
Subjt:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ

Query:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP
        AGRPRK+RIP IGE    +KCSRC R  HN RTC+F P
Subjt:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP

TYK03234.1 uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa]5.2e-4256.52Show/hide
Query:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ
        V P+S  E++VVD    FLVKL+  SCSC  WD +EIPC HAL+V+R  N+N Y+FVS+YY++  LS+TYGG++ P+GNH +WS ++V  N LP + +R 
Subjt:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ

Query:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP
        AGRPRK+RIP IGE    +KCSRC R GHN RTC+F P
Subjt:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP

XP_008467000.1 PREDICTED: uncharacterized protein LOC103504407, partial [Cucumis melo]6.2e-4359.29Show/hide
Query:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ
        V  I++ E++V++   QF+V+LD  SC+CRVWD D+IPC HAL VLRG ++N YSFVSKY+ S TL STY G + PVGNH  W SI +  N LP   KR+
Subjt:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ

Query:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPPFL
        AG+ +KQRI  IGE +SH++CS CHR GHNRR CKFPPFL
Subjt:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPPFL

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]4.6e-4655.76Show/hide
Query:  IMMEVTIITYIYIDVDLEENDKLCLKHVYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGI
        + M++ + ++   ++  + N     K V PI+N EYKV+D DN FLV L   SCSCRVWD  EIPC HA  V+ G N+++Y+FV  YYF  TL STY G 
Subjt:  IMMEVTIITYIYIDVDLEENDKLCLKHVYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGI

Query:  IHPVGNHYEWSSIDVGMNALPRIVKRQAGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP
        ++P+GNH +W SIDVG+N LP IVKR  GRPRKQRI  IGE +  +KCSRCHR GHN RTCKFPP
Subjt:  IHPVGNHYEWSSIDVGMNALPRIVKRQAGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP

TrEMBL top hitse value%identityAlignment
A0A1S3CSI6 uncharacterized protein LOC1035044073.0e-4359.29Show/hide
Query:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ
        V  I++ E++V++   QF+V+LD  SC+CRVWD D+IPC HAL VLRG ++N YSFVSKY+ S TL STY G + PVGNH  W SI +  N LP   KR+
Subjt:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ

Query:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPPFL
        AG+ +KQRI  IGE +SH++CS CHR GHNRR CKFPPFL
Subjt:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPPFL

A0A5A7SVB1 ZnF_PMZ domain-containing protein6.3e-4155.07Show/hide
Query:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ
        V P+S  E++VVD    FLVKL+  SCSC  WD +EIPC +AL+V+R  N+N Y+FVS+YY++  LS+TYGG++ P+ NH +WS ++V  N LP + +R 
Subjt:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ

Query:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP
        AGRPRK+RIP IGE    +KCSRC R GHN RTC F P
Subjt:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP

A0A5A7TVL2 ZnF_PMZ domain-containing protein3.7e-4155.8Show/hide
Query:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ
        V P+S  E++VVD    FLVKL+  SCSC  WD +EIPC  AL+V+R  N+N Y+FVS+YY++  LS+TYGG++ P+GNH +WS ++V  N LP + +R 
Subjt:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ

Query:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP
        AGRPRK+RIP IGE    +KCSRC R GHN RTC F P
Subjt:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP

A0A5D3BD68 SWIM-type domain-containing protein1.3e-4155.8Show/hide
Query:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ
        V P+S  E++VVD    FLVKL+  SCSC  WD +EIPC HAL+V+R  N+N Y+FVS+YY++  LS+TYGG++ P+GNH +WS + V  N LP + +R 
Subjt:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ

Query:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP
        AGRPRK+RIP IGE    +KCSRC R  HN RTC+F P
Subjt:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP

A0A5D3BVP4 SWIM-type domain-containing protein2.5e-4256.52Show/hide
Query:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ
        V P+S  E++VVD    FLVKL+  SCSC  WD +EIPC HAL+V+R  N+N Y+FVS+YY++  LS+TYGG++ P+GNH +WS ++V  N LP + +R 
Subjt:  VYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEWSSIDVGMNALPRIVKRQ

Query:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP
        AGRPRK+RIP IGE    +KCSRC R GHN RTC+F P
Subjt:  AGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase8.4e-0626.92Show/hide
Query:  NFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEW
        +F+        +++V+L+  +C+CR +   + PC HAL V     +N   +V + Y  E    TY     PV +   W
Subjt:  NFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYGGIIHPVGNHYEW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGATGCTTGTTTTGATGGGTCCTTTTGTGCAATTATGATGGAAGTGACAATTATTACATACATTTACATAGATGTTGATTTGGAGGAAAATGATAAATTATGTCT
GAAGCACGTTTATCCTATTAGCAACTTTGAATATAAAGTAGTTGATAATGACAATCAATTCTTGGTAAAGTTGGATTCTGGGTCTTGTAGTTGTCGTGTTTGGGATCATG
ATGAAATTCCATGTTGTCATGCACTTGTTGTTCTTCGCGGGTTTAATGTGAATGTTTATTCTTTTGTGTCTAAGTATTATTTCTCAGAAACATTGTCATCAACTTATGGA
GGTATAATTCACCCAGTTGGGAATCATTATGAATGGAGTTCTATAGATGTTGGCATGAATGCATTACCTCGAATTGTTAAACGTCAAGCAGGAAGGCCCCGAAAGCAAAG
GATTCCGTGGATTGGTGAAGCAAGAAGTCACACAAAATGTAGTCGTTGTCATCGTGTTGGTCACAATCGTAGGACATGCAAATTTCCACCATTTTTACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGATGCTTGTTTTGATGGGTCCTTTTGTGCAATTATGATGGAAGTGACAATTATTACATACATTTACATAGATGTTGATTTGGAGGAAAATGATAAATTATGTCT
GAAGCACGTTTATCCTATTAGCAACTTTGAATATAAAGTAGTTGATAATGACAATCAATTCTTGGTAAAGTTGGATTCTGGGTCTTGTAGTTGTCGTGTTTGGGATCATG
ATGAAATTCCATGTTGTCATGCACTTGTTGTTCTTCGCGGGTTTAATGTGAATGTTTATTCTTTTGTGTCTAAGTATTATTTCTCAGAAACATTGTCATCAACTTATGGA
GGTATAATTCACCCAGTTGGGAATCATTATGAATGGAGTTCTATAGATGTTGGCATGAATGCATTACCTCGAATTGTTAAACGTCAAGCAGGAAGGCCCCGAAAGCAAAG
GATTCCGTGGATTGGTGAAGCAAGAAGTCACACAAAATGTAGTCGTTGTCATCGTGTTGGTCACAATCGTAGGACATGCAAATTTCCACCATTTTTACCATGA
Protein sequenceShow/hide protein sequence
MNDACFDGSFCAIMMEVTIITYIYIDVDLEENDKLCLKHVYPISNFEYKVVDNDNQFLVKLDSGSCSCRVWDHDEIPCCHALVVLRGFNVNVYSFVSKYYFSETLSSTYG
GIIHPVGNHYEWSSIDVGMNALPRIVKRQAGRPRKQRIPWIGEARSHTKCSRCHRVGHNRRTCKFPPFLP