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Tan0001550 (gene) of Snake gourd v1 genome

Gene IDTan0001550
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG08:19695209..19695589
RNA-Seq ExpressionTan0001550
SyntenyTan0001550
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]9.1e-1748.04Show/hide
Query:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE
        S GSKRKR +   EMV ++  A +      K I +WP+EKR TEVE+R+++V  L  IP+L S+ + ++M ILFR V+A E FL +P +L+LEYC IL+E
Subjt:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE

Query:  KN
         N
Subjt:  KN

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.9e-1546Show/hide
Query:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE
        S GSKRK+ +   E V +++ A++      K IA WP+EKR TEVE+R++++  L  IPEL SR + +++ ILFR V+A E FL +P E +LEYC IL++
Subjt:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-1750Show/hide
Query:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE
        S GSKRKR +   E V ++R AM+      K IA WP+EKR+TEVE+R+++V  L  I EL SR + ++M ILF  V+A E FL +P+EL+LEYC IL++
Subjt:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.8e-1547.42Show/hide
Query:  SKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE
        SKRKR + + E V ++R  M+      K IA+WP+EKR  EVE+R+Q+V  L  IP+L S+ + ++M ILFR ++A E FL +P EL+LEYC IL++
Subjt:  SKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]5.3e-1743.8Show/hide
Query:  DTPHDEMHETPTSRNNTLGASMSRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQ
        D   DE H TPT      G +  RGSKRK   Y SE+V + ++AMD      K IAEW +++  TEVE+R+++V+ L  IP+L ++ K + MNI+FR+V 
Subjt:  DTPHDEMHETPTSRNNTLGASMSRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQ

Query:  ASESFLFVPLELQLEYCQILI
         +ESFL +P +++LEYC++L+
Subjt:  ASESFLFVPLELQLEYCQILI

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.9e-1547.42Show/hide
Query:  SKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE
        SKRKR + + E V ++R  M+      K IA+WP+EKR  EVE+R+Q+V  L  IP+L S+ + ++M ILFR ++A E FL +P EL+LEYC IL++
Subjt:  SKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE

A0A5A7SQU2 Putative nuclease HARBI11.4e-1546Show/hide
Query:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE
        S GSKRK+ +   E V +++ A++      K IA WP+EKR TEVE+R++++  L  IPEL SR + +++ ILFR V+A E FL +P E +LEYC IL++
Subjt:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE

A0A5A7U0H7 Retrotransposon protein1.9e-1547.42Show/hide
Query:  SKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE
        SKRKR + + E V ++R  M+      K IA+WP+EKR  EVE+R+Q+V  L  IP+L S+ + ++M ILFR ++A E FL +P EL+LEYC IL++
Subjt:  SKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE

A0A5D3BZU3 Retrotransposon protein4.4e-1748.04Show/hide
Query:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE
        S GSKRKR +   EMV ++  A +      K I +WP+EKR TEVE+R+++V  L  IP+L S+ + ++M ILFR V+A E FL +P +L+LEYC IL+E
Subjt:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE

Query:  KN
         N
Subjt:  KN

A0A5D3CT52 Retrotransposon protein2.6e-1750Show/hide
Query:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE
        S GSKRKR +   E V ++R AM+      K IA WP+EKR+TEVE+R+++V  L  I EL SR + ++M ILF  V+A E FL +P+EL+LEYC IL++
Subjt:  SRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVPLELQLEYCQILIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACGCCTCATGATGAGATGCATGAGACACCTACTAGTCGGAACAACACGTTAGGTGCTTCTATGTCCAGAGGTAGTAAAAGGAAGCGCTCCACTTATCAATCTGA
GATGGTTGTTATGGTACGAGATGCTATGGATGTGAATGCATCTCACCCAAAGATGATTGCAGAGTGGCCCGAAGAAAAGCGTATGACGGAGGTAGAAGTACGCTCACAAA
TTGTGGATCACCTATATAGGATCCCAGAGTTGGATAGTCGGGCCAAAACGCAGGTGATGAACATCCTCTTTCGTGATGTCCAAGCATCAGAAAGTTTCTTATTTGTGCCT
CTAGAGTTGCAGCTGGAATATTGTCAGATCCTGATTGAGAAAAACACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACACGCCTCATGATGAGATGCATGAGACACCTACTAGTCGGAACAACACGTTAGGTGCTTCTATGTCCAGAGGTAGTAAAAGGAAGCGCTCCACTTATCAATCTGA
GATGGTTGTTATGGTACGAGATGCTATGGATGTGAATGCATCTCACCCAAAGATGATTGCAGAGTGGCCCGAAGAAAAGCGTATGACGGAGGTAGAAGTACGCTCACAAA
TTGTGGATCACCTATATAGGATCCCAGAGTTGGATAGTCGGGCCAAAACGCAGGTGATGAACATCCTCTTTCGTGATGTCCAAGCATCAGAAAGTTTCTTATTTGTGCCT
CTAGAGTTGCAGCTGGAATATTGTCAGATCCTGATTGAGAAAAACACTTGA
Protein sequenceShow/hide protein sequence
MDTPHDEMHETPTSRNNTLGASMSRGSKRKRSTYQSEMVVMVRDAMDVNASHPKMIAEWPEEKRMTEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDVQASESFLFVP
LELQLEYCQILIEKNT