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Tan0001553 (gene) of Snake gourd v1 genome

Gene IDTan0001553
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG06:45228963..45229835
RNA-Seq ExpressionTan0001553
SyntenyTan0001553
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-0640.96Show/hide
Query:  GSMREEAWALITYEKLPDLCFGWGRLGHGVQECEENNLAQGIYLPFGNWLRESSNRGLDEIKGHLERASTRVVFVGRGRGRGR
        G M +E W  ++YEKLPD C+  GR+GH VQEC+E          FG WLR+S        KG  E   ++   + RGRG G+
Subjt:  GSMREEAWALITYEKLPDLCFGWGRLGHGVQECEENNLAQGIYLPFGNWLRESSNRGLDEIKGHLERASTRVVFVGRGRGRGR

OMO49877.1 hypothetical protein COLO4_38315 [Corchorus olitorius]7.8e-0636Show/hide
Query:  EEAWALITYEKLPDLCFGWGRLGHGVQECEENNLAQGIYLPFGNWLRESSNRGL---DEIKGHLERASTRVVFVGRGRGR--GRAGWEIGNRR-------
        ++ WA I YEKLPD CF  GRL HG + C+  +   G    FG  LR +S R L   DE+K   E +   +   G+G  R   R GW  G R        
Subjt:  EEAWALITYEKLPDLCFGWGRLGHGVQECEENNLAQGIYLPFGNWLRESSNRGL---DEIKGHLERASTRVVFVGRGRGR--GRAGWEIGNRR-------

Query:  -EGEAGKARNVGWALGSHSTKEVEE
         EG A +  +VG +   +S K +E+
Subjt:  -EGEAGKARNVGWALGSHSTKEVEE

XP_012834055.1 PREDICTED: uncharacterized protein LOC105954917 [Erythranthe guttata]2.5e-0447.27Show/hide
Query:  EAWALITYEKLPDLCFGWGRLGHGVQEC----EENNLAQGIYLPFGNWLRESSNR
        + W   TYE+LP+ CF  G LGHG   C    EEN +  G  LP+G WLR S+ R
Subjt:  EAWALITYEKLPDLCFGWGRLGHGVQEC----EENNLAQGIYLPFGNWLRESSNR

XP_012837518.1 PREDICTED: uncharacterized protein LOC105958060 [Erythranthe guttata]3.3e-0444.44Show/hide
Query:  EAWALITYEKLPDLCFGWGRLGHGVQEC----EENNLAQGIYLPFGNWLRESSN
        + W  +TYE+LP+ CF  G LGHG  +C    EE  +  G  LP+G WLR S++
Subjt:  EAWALITYEKLPDLCFGWGRLGHGVQEC----EENNLAQGIYLPFGNWLRESSN

XP_012849901.1 PREDICTED: uncharacterized protein LOC105969674 [Erythranthe guttata]3.3e-0442.11Show/hide
Query:  WALITYEKLPDLCFGWGRLGHGVQEC----EENNLAQGIYLPFGNWLRESSNRGLDE
        W   TYE+LP  CF  G +GHG Q C    E+N +  G  LP+G W+R S+ + +D+
Subjt:  WALITYEKLPDLCFGWGRLGHGVQEC----EENNLAQGIYLPFGNWLRESSNRGLDE

TrEMBL top hitse value%identityAlignment
A0A1R3FVJ2 Uncharacterized protein3.8e-0636Show/hide
Query:  EEAWALITYEKLPDLCFGWGRLGHGVQECEENNLAQGIYLPFGNWLRESSNRGL---DEIKGHLERASTRVVFVGRGRGR--GRAGWEIGNRR-------
        ++ WA I YEKLPD CF  GRL HG + C+  +   G    FG  LR +S R L   DE+K   E +   +   G+G  R   R GW  G R        
Subjt:  EEAWALITYEKLPDLCFGWGRLGHGVQECEENNLAQGIYLPFGNWLRESSNRGL---DEIKGHLERASTRVVFVGRGRGR--GRAGWEIGNRR-------

Query:  -EGEAGKARNVGWALGSHSTKEVEE
         EG A +  +VG +   +S K +E+
Subjt:  -EGEAGKARNVGWALGSHSTKEVEE

A0A5C7GUT9 Uncharacterized protein3.5e-0435.85Show/hide
Query:  ALITYEKLPDLCFGWGRLGHGVQECEENN----LAQGIYLPFGNWLRESSNRG
        A++ YE+LP+ C+ +G +GHG+ +C  ++      +GI+  +G+WLR +S+ G
Subjt:  ALITYEKLPDLCFGWGRLGHGVQECEENN----LAQGIYLPFGNWLRESSNRG

A0A5D3C0K2 Reverse transcriptase2.2e-0640.96Show/hide
Query:  GSMREEAWALITYEKLPDLCFGWGRLGHGVQECEENNLAQGIYLPFGNWLRESSNRGLDEIKGHLERASTRVVFVGRGRGRGR
        G M +E W  ++YEKLPD C+  GR+GH VQEC+E          FG WLR+S        KG  E   ++   + RGRG G+
Subjt:  GSMREEAWALITYEKLPDLCFGWGRLGHGVQECEENNLAQGIYLPFGNWLRESSNRGLDEIKGHLERASTRVVFVGRGRGRGR

W9RBJ0 CCHC-type domain-containing protein2.7e-0446.81Show/hide
Query:  WALITYEKLPDLCFGWGRLGHGVQECEENNLA---QGIYLPFGNWLR
        W  + YEKLPD C+G G+ GHG +EC    +A       LP+G+WLR
Subjt:  WALITYEKLPDLCFGWGRLGHGVQECEENNLA---QGIYLPFGNWLR

W9RRS1 CCHC-type domain-containing protein2.7e-0446.81Show/hide
Query:  WALITYEKLPDLCFGWGRLGHGVQECEENNLA---QGIYLPFGNWLR
        W  + YEKLPD C+G G+ GHG +EC    +A       LP+G+WLR
Subjt:  WALITYEKLPDLCFGWGRLGHGVQECEENNLA---QGIYLPFGNWLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAAAATCTCGAACATTGAGGCACCTATCTCTTTCGACCGAGCAGACAAAGGTTCCATGAGAGAGGAAGCTTGGGCACTAATCACTTATGAAAAGCTACCTGATTT
GTGCTTTGGGTGGGGGAGATTAGGACATGGAGTCCAAGAGTGTGAGGAAAATAATCTAGCCCAAGGTATATATCTTCCTTTTGGGAATTGGCTGCGTGAATCTTCGAACA
GGGGACTGGATGAAATTAAAGGCCATTTGGAAAGGGCTTCAACTCGAGTTGTTTTTGTGGGAAGGGGTCGAGGACGAGGGCGGGCAGGGTGGGAAATAGGTAATCGGAGG
GAGGGGGAGGCCGGAAAAGCTAGGAATGTTGGTTGGGCGCTGGGTTCCCATTCGACGAAAGAAGTTGAGGAAAGGGAATCTCCGACGGCAACGGTAGGGGGCACCCTCAA
GGAAACAATGGGTCCCAACGGTATTAACAAGGTGGGCCCCGCCCACTGTGAGGTCAATTTGGATCTAATAGGGAATGAGACTGGGAAATCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGAAAATCTCGAACATTGAGGCACCTATCTCTTTCGACCGAGCAGACAAAGGTTCCATGAGAGAGGAAGCTTGGGCACTAATCACTTATGAAAAGCTACCTGATTT
GTGCTTTGGGTGGGGGAGATTAGGACATGGAGTCCAAGAGTGTGAGGAAAATAATCTAGCCCAAGGTATATATCTTCCTTTTGGGAATTGGCTGCGTGAATCTTCGAACA
GGGGACTGGATGAAATTAAAGGCCATTTGGAAAGGGCTTCAACTCGAGTTGTTTTTGTGGGAAGGGGTCGAGGACGAGGGCGGGCAGGGTGGGAAATAGGTAATCGGAGG
GAGGGGGAGGCCGGAAAAGCTAGGAATGTTGGTTGGGCGCTGGGTTCCCATTCGACGAAAGAAGTTGAGGAAAGGGAATCTCCGACGGCAACGGTAGGGGGCACCCTCAA
GGAAACAATGGGTCCCAACGGTATTAACAAGGTGGGCCCCGCCCACTGTGAGGTCAATTTGGATCTAATAGGGAATGAGACTGGGAAATCGTAA
Protein sequenceShow/hide protein sequence
MPKISNIEAPISFDRADKGSMREEAWALITYEKLPDLCFGWGRLGHGVQECEENNLAQGIYLPFGNWLRESSNRGLDEIKGHLERASTRVVFVGRGRGRGRAGWEIGNRR
EGEAGKARNVGWALGSHSTKEVEERESPTATVGGTLKETMGPNGINKVGPAHCEVNLDLIGNETGKS