; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001594 (gene) of Snake gourd v1 genome

Gene IDTan0001594
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA repair protein XRCC2 homolog
Genome locationLG04:36206266..36208099
RNA-Seq ExpressionTan0001594
SyntenyTan0001594
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0005657 - replication fork (cellular component)
GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR013632 - DNA recombination and repair protein Rad51-like, C-terminal
IPR020588 - DNA recombination and repair protein RecA-like, ATP-binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR030547 - DNA repair protein XRCC2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032399.1 DNA repair protein XRCC2-like protein [Cucurbita argyrosperma subsp. argyrosperma]1.9e-5084.55Show/hide
Query:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL
        M L QWIDGDE+AA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQAAVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRL+QVL
Subjt:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL

Query:  KLRILEADGNG-LDVPFSVGLFF
        KLRILE +G+G L VPF++   F
Subjt:  KLRILEADGNG-LDVPFSVGLFF

XP_022155175.1 DNA repair protein XRCC2 homolog [Momordica charantia]1.4e-5091.07Show/hide
Query:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL
        M LSQWI GDE+AA MLARVLK+R SLFVPPLHR+PLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLD+SRLSQVL
Subjt:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL

Query:  KLRILEADGNGL
        KLRILEA+GNGL
Subjt:  KLRILEADGNGL

XP_022998310.1 DNA repair protein XRCC2 homolog isoform X1 [Cucurbita maxima]1.4e-5091.89Show/hide
Query:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL
        M L QWIDGDESAA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQAAVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVL
Subjt:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL

Query:  KLRILEADGNG
        KLRILE +GNG
Subjt:  KLRILEADGNG

XP_022998340.1 DNA repair protein XRCC2 homolog isoform X3 [Cucurbita maxima]1.4e-5091.89Show/hide
Query:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL
        M L QWIDGDESAA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQAAVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVL
Subjt:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL

Query:  KLRILEADGNG
        KLRILE +GNG
Subjt:  KLRILEADGNG

XP_023550059.1 DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo]3.2e-5090.99Show/hide
Query:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL
        M L QWIDGDE+AA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQAAVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVL
Subjt:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL

Query:  KLRILEADGNG
        KLRILE +GNG
Subjt:  KLRILEADGNG

TrEMBL top hitse value%identityAlignment
A0A6J1DLP4 DNA repair protein XRCC2 homolog7.0e-5191.07Show/hide
Query:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL
        M LSQWI GDE+AA MLARVLK+R SLFVPPLHR+PLR GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLD+SRLSQVL
Subjt:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL

Query:  KLRILEADGNGL
        KLRILEA+GNGL
Subjt:  KLRILEADGNGL

A0A6J1GYJ6 DNA repair protein XRCC2 homolog isoform X33.8e-4989.19Show/hide
Query:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL
        M L QWIDGDE+AA ML RV KERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQAAVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVL
Subjt:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL

Query:  KLRILEADGNG
        KLRILE +G+G
Subjt:  KLRILEADGNG

A0A6J1GZX5 DNA repair protein XRCC2 homolog isoform X13.8e-4989.19Show/hide
Query:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL
        M L QWIDGDE+AA ML RV KERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQAAVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVL
Subjt:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL

Query:  KLRILEADGNG
        KLRILE +G+G
Subjt:  KLRILEADGNG

A0A6J1KC54 DNA repair protein XRCC2 homolog isoform X17.0e-5191.89Show/hide
Query:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL
        M L QWIDGDESAA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQAAVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVL
Subjt:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL

Query:  KLRILEADGNG
        KLRILE +GNG
Subjt:  KLRILEADGNG

A0A6J1KC81 DNA repair protein XRCC2 homolog isoform X37.0e-5191.89Show/hide
Query:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL
        M L QWIDGDESAA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQAAVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVL
Subjt:  MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVL

Query:  KLRILEADGNG
        KLRILE +GNG
Subjt:  KLRILEADGNG

SwissProt top hitse value%identityAlignment
O43543 DNA repair protein XRCC22.4e-0835.43Show/hide
Query:  ESAAVMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLK
        ES   +LAR+     LKE   +LF     P+H      G+++E  GP G+ KT++L      CILPK       GGLE  V+FID D   D+ RL  +L+
Subjt:  ESAAVMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLK

Query:  LRILEADGNGLDVPFSVGLFFHVFHCS
         R+ ++      + + +G FF V+ CS
Subjt:  LRILEADGNGLDVPFSVGLFFHVFHCS

Q682D3 DNA repair protein XRCC2 homolog1.6e-3667.59Show/hide
Query:  WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRIL
        WI GDE+A  ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK WNG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L
Subjt:  WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRIL

Query:  EAD--GNG
        +A+  GNG
Subjt:  EAD--GNG

Q97BJ9 DNA repair and recombination protein RadA1.2e-0438.81Show/hide
Query:  VVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAD
        + E  G  GS KTQI+ Q AVNC +PKE      GG +  V+ ID +      R+ Q+ K + L+ D
Subjt:  VVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAD

Q9CX47 DNA repair protein XRCC26.0e-0736.79Show/hide
Query:  ESAAVMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLK
        ES   +LAR+     LKE   +LF     P+H      G++ E  GP G+ KT++L      CILPK       GGL+  V+FID D   D+ RL  VL+
Subjt:  ESAAVMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLK

Query:  LRILEA
         R+ ++
Subjt:  LRILEA

Q9HJ68 DNA repair and recombination protein RadA2.8e-0438.81Show/hide
Query:  VVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAD
        + E  G  GS KTQI+ Q AVNC LPKE      GG +  V+ ID +      R+ Q+ K +  + D
Subjt:  VVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAD

Arabidopsis top hitse value%identityAlignment
AT2G28560.1 DNA repair (Rad51) family protein6.4e-0433.33Show/hide
Query:  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQV
        G + ELVGP G  K+Q  ++ A++   P     V YGGL+  V++ID++ +    R+ ++
Subjt:  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQV

AT2G28560.2 DNA repair (Rad51) family protein6.4e-0433.33Show/hide
Query:  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQV
        G + ELVGP G  K+Q  ++ A++   P     V YGGL+  V++ID++ +    R+ ++
Subjt:  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQV

AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2)1.1e-3767.59Show/hide
Query:  WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRIL
        WI GDE+A  ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK WNG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L
Subjt:  WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRIL

Query:  EAD--GNG
        +A+  GNG
Subjt:  EAD--GNG

AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2)1.1e-3767.59Show/hide
Query:  WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRIL
        WI GDE+A  ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK WNG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L
Subjt:  WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRIL

Query:  EAD--GNG
        +A+  GNG
Subjt:  EAD--GNG

AT5G64520.3 homolog of X-ray repair cross complementing 2 (XRCC2)1.1e-3767.59Show/hide
Query:  WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRIL
        WI GDE+A  ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK WNG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L
Subjt:  WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRIL

Query:  EAD--GNG
        +A+  GNG
Subjt:  EAD--GNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCTTAGCCAGTGGATCGACGGCGATGAGAGCGCAGCGGTGATGCTTGCCAGAGTCCTGAAAGAGCGAACCTCCTTGTTTGTTCCGCCTCTCCACAGAGTTCCTCT
CCGCGTCGGCAATGTGGTCGAACTTGTTGGGCCCTCTGGTTCTGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGGTGC
GCTATGGAGGCTTGGAGTGTTCAGTGGTGTTCATTGACTTGGACTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTCTGAAGCTTCGAATTTTGGAGGCCGATGGCAAT
GGTTTGGATGTTCCTTTTTCTGTTGGACTGTTTTTTCATGTCTTTCATTGTTCTTTCATTTTTCTAGATTTTCTGATTAAAAAAGATGCCGAAGTTTCATGTCAATAG
mRNA sequenceShow/hide mRNA sequence
TTGATCCATGTTCTAAAATTCCACGCGCCTTGTTCCGGGAAAAAAACCAAAACCGTTTGCATTAGGCCAATTTCCCTCCAAAGCCGCCGCCGCTCCGGCCAAACAAGGGC
GTTGTTATGACGCTTAGCCAGTGGATCGACGGCGATGAGAGCGCAGCGGTGATGCTTGCCAGAGTCCTGAAAGAGCGAACCTCCTTGTTTGTTCCGCCTCTCCACAGAGT
TCCTCTCCGCGTCGGCAATGTGGTCGAACTTGTTGGGCCCTCTGGTTCTGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATG
GGGTGCGCTATGGAGGCTTGGAGTGTTCAGTGGTGTTCATTGACTTGGACTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTCTGAAGCTTCGAATTTTGGAGGCCGAT
GGCAATGGTTTGGATGTTCCTTTTTCTGTTGGACTGTTTTTTCATGTCTTTCATTGTTCTTTCATTTTTCTAGATTTTCTGATTAAAAAAGATGCCGAAGTTTCATGTCA
ATAG
Protein sequenceShow/hide protein sequence
MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGN
GLDVPFSVGLFFHVFHCSFIFLDFLIKKDAEVSCQ