| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa] | 3.5e-111 | 35.49 | Show/hide |
Query: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
+DDL+FVL E+CPQV +NA R VR+ Y+RW KAN+KA+ Y+LAS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM +H
Subjt: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
Query: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
VL+MMVHFN+A N A IDE+S V+FILE+LP+SFLQFRSNAVMN + + LT+LLNELQTF+SLMKI+G KGEANVA +R +H+GSTSGTK++ SSS N
Subjt: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
Query: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKKE----------------------------------------
+ KK KK G+G + + AAA+ KK K A KG CF CN++ HWKR C KY+A+KKK
Subjt: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKKE----------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------DKPDEVKPIGCKWIYKRKRGVDE--------------------------------KSIRILLVIAAYYDYEVWQ
D+PD VKPIGCKWIYKRKRG D KSIRILL IAAY+DYE+WQ
Subjt: --------------------------DKPDEVKPIGCKWIYKRKRGVDE--------------------------------KSIRILLVIAAYYDYEVWQ
Query: MDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGY
MDVKT+FLN NLEETIYM QP+GFI+PGQEQK+C+L RSIYG+KQASRSWNIRFD AI+SYG D DEPCVYK+I+N SVAFL LYVDDILLIGND+G
Subjt: MDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGY
Query: LTDIKEWLATQFQMKDLGDA
LTDIK+WLATQFQMKDLG+A
Subjt: LTDIKEWLATQFQMKDLGDA
|
|
| KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa] | 1.0e-110 | 36.79 | Show/hide |
Query: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
+DDL+FVL EECPQV +NA R VR+ Y+RW KAN+KA+ Y+LAS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM +H
Subjt: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
Query: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
VL+MMVHFN+AE NGA IDE+S V+FILE+LP+SFLQFRSNAVMN + + LT+LLNELQTF+SLMKI+G KGEANVA +R +H+GSTSGTK++ SSS N
Subjt: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
Query: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKK-----------------------------------------
+ KK KK G+G + + AAA+ KK K A KG CFHCN++ HWKR C KY+AEKKK
Subjt: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKK-----------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---------------------------------------------------------EDKPDEVKP----------------------------------
E+ P +++P
Subjt: ---------------------------------------------------------EDKPDEVKP----------------------------------
Query: --------------------------------------------IGC-----------------------------------------------------
+G
Subjt: --------------------------------------------IGC-----------------------------------------------------
Query: ----KWI---------------YKRKRGVDE----------KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSI
+WI Y + GVD KSIRILL IAAY+DYE+WQMDVKT+FLN NLEETIYM QP+GFI+PGQEQK+C+L RSI
Subjt: ----KWI---------------YKRKRGVDE----------KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSI
Query: YGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
YG+KQASRSWNIRFD AI+SYG D DEPCVYK+I+N SVAFL LYVDDILLIGND+G LTDIK+WLATQFQMKDLG+A
Subjt: YGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
|
|
| KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa] | 8.3e-121 | 43.32 | Show/hide |
Query: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
+DDL+FVL EECPQV +NA + VR+ Y+RW KAN+KA+ Y+LAS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM +H
Subjt: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
Query: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
VL++MVHFN+AE NGA IDE+S V+FILE+LP+SFLQFRSNAVMN + + LT+LLNELQTF+SLMKI+G KGEANVA +R +H+GSTSGTK++ SSS N
Subjt: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
Query: LRGKKK-----NMKKVGKGKQTDKAAAQKG----------------------------------------------------------------------
+ KKK N + K T KA A KG
Subjt: LRGKKK-----NMKKVGKGKQTDKAAAQKG----------------------------------------------------------------------
Query: ------------KKVKDFADKGKCF----HCNEDEHWKRKCLKYIAEKKKE-------------------------------------------------
K K F F H E + + L ++++ +
Subjt: ------------KKVKDFADKGKCF----HCNEDEHWKRKCLKYIAEKKKE-------------------------------------------------
Query: --------------------------------------------------DKPDEVKPIGCKWIYKRKRGVDE---------------------------
D+PD VKPIGCKWIYKRKRG D
Subjt: --------------------------------------------------DKPDEVKPIGCKWIYKRKRGVDE---------------------------
Query: -----KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKI
KSIRILL IAAY+DYE+WQMDVKT+FLN NLEETIYM QP+GFI+PGQEQK+C+L RSIYG+KQASRSWNIRFD AI+SYG D DEPCVYK+I
Subjt: -----KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKI
Query: LNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
+N VAFL LYVDDILLIGND+G LTDIK+WLATQFQMKDLG+A
Subjt: LNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
|
|
| KAA0066490.1 gag/pol protein [Cucumis melo var. makuwa] | 5.4e-120 | 38.65 | Show/hide |
Query: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
+DDL+FVL EECPQV +NA R VR+ Y+RW KAN+KA+ Y+LAS+S++LAKKHE ++TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM +H
Subjt: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
Query: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
VL+MMVHF++AE NGA IDE+S V+FILE+LP+SFLQFRSNAVMN + + LT+LLNELQTF+SLMKI+G KGEANVA +R +H+GSTSGTK++ SSS N
Subjt: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
Query: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKKE----------------------------------------
+ KK KK G+G + + AAA+ KK K A KG CFHCN++ HWKR C KY+AEKKK
Subjt: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKKE----------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------DKPDEVKPIGCKWIYKRKRGVDE-------------
D+PD VKPIGCKWIYKRKRG D
Subjt: ----------------------------------------------------------------DKPDEVKPIGCKWIYKRKRGVDE-------------
Query: -------------------KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYG
KSIRILL IAAY+DYE+WQMDVKT+FLN NLEETIYM QP+GFI+PGQEQK+C+L RSIYG+KQASRSWNIRFD AI+SYG
Subjt: -------------------KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYG
Query: VDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
D DEPCVYK+I+N SVAFL LYVDDILLI ND+G LTDIK+WLATQFQMKDLG+A
Subjt: VDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
|
|
| KAA0067084.1 gag/pol protein [Cucumis melo var. makuwa] | 2.0e-127 | 44.32 | Show/hide |
Query: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
+DDL+FVL EECPQV +NA R VR+ Y+RW KAN+KA+ Y+LAS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM + +H
Subjt: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
Query: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
VL MMVHFN+ + NGA IDE+S V+FILE+LP+S LQFRSNAVMN + + LT+LL+ELQTF+SLMKI+G KGE NVA +R +HKGSTSGTK++ SSS N
Subjt: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
Query: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKK-----------------------------------------
+ KK KK G+G + + AA+ KK K A KG CFHCN++ HWKR C KY+AEK K
Subjt: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKK-----------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------------------------------------------------EDKPDEVKPIGCKWIYKRKRGVDE----------------------------
++PDE K IGCKWIYKRKRG D
Subjt: ------------------------------------------------EDKPDEVKPIGCKWIYKRKRGVDE----------------------------
Query: ----KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKIL
KSIRILL IAAY+DYE+WQMDVKT+FLN NLEETIYM QP+GFI+ GQEQKVC+L RSIYG+KQASRSWNIRFD AI+SYG D DEPCVYK+I+
Subjt: ----KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKIL
Query: NSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
N+S+AFL LYVDDILLIGND G LTDIK+WL TQFQMK LG+A
Subjt: NSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SNP8 Gag/pol protein | 1.7e-111 | 35.49 | Show/hide |
Query: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
+DDL+FVL E+CPQV +NA R VR+ Y+RW KAN+KA+ Y+LAS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM +H
Subjt: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
Query: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
VL+MMVHFN+A N A IDE+S V+FILE+LP+SFLQFRSNAVMN + + LT+LLNELQTF+SLMKI+G KGEANVA +R +H+GSTSGTK++ SSS N
Subjt: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
Query: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKKE----------------------------------------
+ KK KK G+G + + AAA+ KK K A KG CF CN++ HWKR C KY+A+KKK
Subjt: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKKE----------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------DKPDEVKPIGCKWIYKRKRGVDE--------------------------------KSIRILLVIAAYYDYEVWQ
D+PD VKPIGCKWIYKRKRG D KSIRILL IAAY+DYE+WQ
Subjt: --------------------------DKPDEVKPIGCKWIYKRKRGVDE--------------------------------KSIRILLVIAAYYDYEVWQ
Query: MDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGY
MDVKT+FLN NLEETIYM QP+GFI+PGQEQK+C+L RSIYG+KQASRSWNIRFD AI+SYG D DEPCVYK+I+N SVAFL LYVDDILLIGND+G
Subjt: MDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGY
Query: LTDIKEWLATQFQMKDLGDA
LTDIK+WLATQFQMKDLG+A
Subjt: LTDIKEWLATQFQMKDLGDA
|
|
| A0A5A7U869 Gag/pol protein | 4.9e-111 | 36.79 | Show/hide |
Query: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
+DDL+FVL EECPQV +NA R VR+ Y+RW KAN+KA+ Y+LAS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM +H
Subjt: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
Query: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
VL+MMVHFN+AE NGA IDE+S V+FILE+LP+SFLQFRSNAVMN + + LT+LLNELQTF+SLMKI+G KGEANVA +R +H+GSTSGTK++ SSS N
Subjt: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
Query: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKK-----------------------------------------
+ KK KK G+G + + AAA+ KK K A KG CFHCN++ HWKR C KY+AEKKK
Subjt: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKK-----------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---------------------------------------------------------EDKPDEVKP----------------------------------
E+ P +++P
Subjt: ---------------------------------------------------------EDKPDEVKP----------------------------------
Query: --------------------------------------------IGC-----------------------------------------------------
+G
Subjt: --------------------------------------------IGC-----------------------------------------------------
Query: ----KWI---------------YKRKRGVDE----------KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSI
+WI Y + GVD KSIRILL IAAY+DYE+WQMDVKT+FLN NLEETIYM QP+GFI+PGQEQK+C+L RSI
Subjt: ----KWI---------------YKRKRGVDE----------KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSI
Query: YGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
YG+KQASRSWNIRFD AI+SYG D DEPCVYK+I+N SVAFL LYVDDILLIGND+G LTDIK+WLATQFQMKDLG+A
Subjt: YGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
|
|
| A0A5A7V6N0 Gag/pol protein | 4.0e-121 | 43.32 | Show/hide |
Query: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
+DDL+FVL EECPQV +NA + VR+ Y+RW KAN+KA+ Y+LAS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM +H
Subjt: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
Query: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
VL++MVHFN+AE NGA IDE+S V+FILE+LP+SFLQFRSNAVMN + + LT+LLNELQTF+SLMKI+G KGEANVA +R +H+GSTSGTK++ SSS N
Subjt: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
Query: LRGKKK-----NMKKVGKGKQTDKAAAQKG----------------------------------------------------------------------
+ KKK N + K T KA A KG
Subjt: LRGKKK-----NMKKVGKGKQTDKAAAQKG----------------------------------------------------------------------
Query: ------------KKVKDFADKGKCF----HCNEDEHWKRKCLKYIAEKKKE-------------------------------------------------
K K F F H E + + L ++++ +
Subjt: ------------KKVKDFADKGKCF----HCNEDEHWKRKCLKYIAEKKKE-------------------------------------------------
Query: --------------------------------------------------DKPDEVKPIGCKWIYKRKRGVDE---------------------------
D+PD VKPIGCKWIYKRKRG D
Subjt: --------------------------------------------------DKPDEVKPIGCKWIYKRKRGVDE---------------------------
Query: -----KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKI
KSIRILL IAAY+DYE+WQMDVKT+FLN NLEETIYM QP+GFI+PGQEQK+C+L RSIYG+KQASRSWNIRFD AI+SYG D DEPCVYK+I
Subjt: -----KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKI
Query: LNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
+N VAFL LYVDDILLIGND+G LTDIK+WLATQFQMKDLG+A
Subjt: LNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
|
|
| A0A5A7VH46 Gag/pol protein | 2.6e-120 | 38.65 | Show/hide |
Query: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
+DDL+FVL EECPQV +NA R VR+ Y+RW KAN+KA+ Y+LAS+S++LAKKHE ++TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM +H
Subjt: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
Query: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
VL+MMVHF++AE NGA IDE+S V+FILE+LP+SFLQFRSNAVMN + + LT+LLNELQTF+SLMKI+G KGEANVA +R +H+GSTSGTK++ SSS N
Subjt: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
Query: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKKE----------------------------------------
+ KK KK G+G + + AAA+ KK K A KG CFHCN++ HWKR C KY+AEKKK
Subjt: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKKE----------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------DKPDEVKPIGCKWIYKRKRGVDE-------------
D+PD VKPIGCKWIYKRKRG D
Subjt: ----------------------------------------------------------------DKPDEVKPIGCKWIYKRKRGVDE-------------
Query: -------------------KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYG
KSIRILL IAAY+DYE+WQMDVKT+FLN NLEETIYM QP+GFI+PGQEQK+C+L RSIYG+KQASRSWNIRFD AI+SYG
Subjt: -------------------KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYG
Query: VDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
D DEPCVYK+I+N SVAFL LYVDDILLI ND+G LTDIK+WLATQFQMKDLG+A
Subjt: VDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
|
|
| A0A5A7VI97 Gag/pol protein | 9.9e-128 | 44.32 | Show/hide |
Query: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
+DDL+FVL EECPQV +NA R VR+ Y+RW KAN+KA+ Y+LAS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM + +H
Subjt: VDDLKFVLTEECPQVLGSNALRNVRDAYDRWIKANDKAKVYMLASMSDILAKKHEGMITAKEIMDFVQGMFGQQSTQARHNALKYIFNSRMMR-VHHWDH
Query: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
VL MMVHFN+ + NGA IDE+S V+FILE+LP+S LQFRSNAVMN + + LT+LL+ELQTF+SLMKI+G KGE NVA +R +HKGSTSGTK++ SSS N
Subjt: VLDMMVHFNIAESNGASIDESSHVNFILETLPDSFLQFRSNAVMNNLIFNLTSLLNELQTFQSLMKIQGLKGEANVA--SRSYHKGSTSGTKTVASSSSN
Query: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKK-----------------------------------------
+ KK KK G+G + + AA+ KK K A KG CFHCN++ HWKR C KY+AEK K
Subjt: LRGKKKNMKKVGKGKQTDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKK-----------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------------------------------------------------EDKPDEVKPIGCKWIYKRKRGVDE----------------------------
++PDE K IGCKWIYKRKRG D
Subjt: ------------------------------------------------EDKPDEVKPIGCKWIYKRKRGVDE----------------------------
Query: ----KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKIL
KSIRILL IAAY+DYE+WQMDVKT+FLN NLEETIYM QP+GFI+ GQEQKVC+L RSIYG+KQASRSWNIRFD AI+SYG D DEPCVYK+I+
Subjt: ----KSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKIL
Query: NSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
N+S+AFL LYVDDILLIGND G LTDIK+WL TQFQMK LG+A
Subjt: NSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 2.5e-19 | 35.71 | Show/hide |
Query: SIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVY---KKILNS
S R +L + Y+ +V QMDVKT+FLN L+E IYM P+G + VC+L ++IYG+KQA+R W F++A++ ++ + C+Y K +N
Subjt: SIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVY---KKILNS
Query: SVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGD
++ ++ LYVDD+++ D+ + + K +L +F+M DL +
Subjt: SVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGD
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.9e-30 | 33.89 | Show/hide |
Query: TDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKKEDKPDEVKPIGCKWIYK----------------------RKRGVD----------EK
+D + K+V +K + ++E + L+ K + P +P+ CKW++K +K+G+D
Subjt: TDKAAAQKGKKVKDFADKGKCFHCNEDEHWKRKCLKYIAEKKKEDKPDEVKPIGCKWIYK----------------------RKRGVD----------EK
Query: SIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVY-KKILNSSV
SIR +L +AA D EV Q+DVKT+FL+ +LEE IYM+QP+GF + G++ VC+L +S+YG+KQA R W ++FD ++S +PCVY K+ ++
Subjt: SIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVY-KKILNSSV
Query: AFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
L LYVDD+L++G D G + +K L+ F MKDLG A
Subjt: AFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGDA
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| P25600 Putative transposon Ty5-1 protein YCL074W | 6.0e-13 | 32.2 | Show/hide |
Query: MDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGY
MDV T+FLN ++E IY+ QP GF+ V L +YG+KQA WN + ++ G ++ E +Y + + ++ +YVDD+L+
Subjt: MDVKTSFLNDNLEETIYMDQPKGFILPGQEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGY
Query: LTDIKEWLATQFQMKDLG
+K+ L + MKDLG
Subjt: LTDIKEWLATQFQMKDLG
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.9e-19 | 28.19 | Show/hide |
Query: PDEVKPIGCKWIYKRKRGVD--------------------------------EKSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPG
P V +GC+WI+ +K D SIRI+L +A + + Q+DV +FL L + +YM QP GFI
Subjt: PDEVKPIGCKWIYKRKRGVD--------------------------------EKSIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPG
Query: QEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKD
+ VC+L++++YG+KQA R+W + + + G ++ + ++ S+ ++ +YVDDIL+ GND L + + L+ +F +KD
Subjt: QEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKD
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.5e-19 | 28.27 | Show/hide |
Query: PDEVKPIGCKWIYKRK----------------RGVDEK----------------SIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPG
P V +GC+WI+ +K +G +++ SIRI+L +A + + Q+DV +FL L + +YM QP GF+
Subjt: PDEVKPIGCKWIYKRK----------------RGVDEK----------------SIRILLVIAAYYDYEVWQMDVKTSFLNDNLEETIYMDQPKGFILPG
Query: QEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGD
+ VCRL+++IYG+KQA R+W + + + G ++ + ++ S+ ++ +YVDDIL+ GND L + L+ +F +K+ D
Subjt: QEQKVCRLKRSIYGVKQASRSWNIRFDEAIRSYGVDHNDDEPCVYKKILNSSVAFLFLYVDDILLIGNDVGYLTDIKEWLATQFQMKDLGD
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