; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001627 (gene) of Snake gourd v1 genome

Gene IDTan0001627
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:17014226..17014534
RNA-Seq ExpressionTan0001627
SyntenyTan0001627
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]8.4e-1351.04Show/hide
Query:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ
        +R+R   ESVAS +++  C +CGK H GRC+ G  V + CG+ GHFKR+CPQL       Q   SHTV Q R S    GE TS A+QK  VGRPRQ
Subjt:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ

KAA0056353.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-1251.04Show/hide
Query:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ
        +R+R   +SVAS +R+  C TCGK H G+CL G  VY+ CG+ GH KR+CPQL       Q   SHT+ Q R S    GEGTS A+QK  VGRP Q
Subjt:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]8.4e-1351.04Show/hide
Query:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ
        +R+R   ESVAS +++  C +CGK H GRC+ G  V + CG+ GHFKR+CPQL       Q   SHTV Q R S    GE TS A+QK  VGRPRQ
Subjt:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ

TYK29162.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-1251.04Show/hide
Query:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ
        +R+R   +SVAS +R+  C TCGK H G+CL G  VY+ CG+ GH KR+CPQL       Q   SHT+ Q R S    GEGTS A+QK  VGRP Q
Subjt:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ

WP_217833293.1 CCHC-type zinc finger protein, partial [Synechococcus sp. PCC 7002]6.9e-1551.58Show/hide
Query:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPR
        SR+ +  ES ASS +KP C T GKYHWG+C       +NCG+ GHFKRECPQLMQE    Q+TTSH + Q ++  G   E TS  +QK   GR R
Subjt:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPR

TrEMBL top hitse value%identityAlignment
A0A1S4E0X6 uncharacterized protein LOC1079913201.2e-1251.04Show/hide
Query:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ
        +R+R   +SVAS +R+  C TCGK H G+CL G  VY+ CG+ GH KR+CPQL       Q   SHT+ Q R S    GEGTS A+QK  VGRP Q
Subjt:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ

A0A5A7T7M6 Reverse transcriptase4.1e-1351.04Show/hide
Query:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ
        +R+R   ESVAS +++  C +CGK H GRC+ G  V + CG+ GHFKR+CPQL       Q   SHTV Q R S    GE TS A+QK  VGRPRQ
Subjt:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ

A0A5A7UKD3 DNA/RNA polymerases superfamily protein1.2e-1251.04Show/hide
Query:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ
        +R+R   +SVAS +R+  C TCGK H G+CL G  VY+ CG+ GH KR+CPQL       Q   SHT+ Q R S    GEGTS A+QK  VGRP Q
Subjt:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ

A0A5D3BTP3 Reverse transcriptase4.1e-1351.04Show/hide
Query:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ
        +R+R   ESVAS +++  C +CGK H GRC+ G  V + CG+ GHFKR+CPQL       Q   SHTV Q R S    GE TS A+QK  VGRPRQ
Subjt:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ

A0A5D3DZW6 DNA/RNA polymerases superfamily protein1.2e-1251.04Show/hide
Query:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ
        +R+R   +SVAS +R+  C TCGK H G+CL G  VY+ CG+ GH KR+CPQL       Q   SHT+ Q R S    GEGTS A+QK  VGRP Q
Subjt:  SRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCAGCGAGGGACTCCCGTACAAGGCAACACAGTGAGTCAGTAGCAAGTTCAGCAAGGAAACCTTTTTGCAGCACTTGTGGAAAGTATCATTGGGGTCGATGTTT
GAGTGGCGAAAAGGTATATTTCAACTGTGGGCGAGGCGGTCACTTCAAAAGGGAATGCCCCCAACTAATGCAAGAGGGCATGGTGGGACAAAGAACTACATCGCATACTG
TGAACCAACAAAGAAAATCTCAAGGCGGTGGAGGAGAAGGCACTAGTAGTGCTAAGCAGAAGAGACAGGTAGGTCGACCCCGACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATCAGCGAGGGACTCCCGTACAAGGCAACACAGTGAGTCAGTAGCAAGTTCAGCAAGGAAACCTTTTTGCAGCACTTGTGGAAAGTATCATTGGGGTCGATGTTT
GAGTGGCGAAAAGGTATATTTCAACTGTGGGCGAGGCGGTCACTTCAAAAGGGAATGCCCCCAACTAATGCAAGAGGGCATGGTGGGACAAAGAACTACATCGCATACTG
TGAACCAACAAAGAAAATCTCAAGGCGGTGGAGGAGAAGGCACTAGTAGTGCTAAGCAGAAGAGACAGGTAGGTCGACCCCGACAATAG
Protein sequenceShow/hide protein sequence
MGSARDSRTRQHSESVASSARKPFCSTCGKYHWGRCLSGEKVYFNCGRGGHFKRECPQLMQEGMVGQRTTSHTVNQQRKSQGGGGEGTSSAKQKRQVGRPRQ