; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001637 (gene) of Snake gourd v1 genome

Gene IDTan0001637
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosome biogenesis protein
Genome locationLG03:81351068..81353146
RNA-Seq ExpressionTan0001637
SyntenyTan0001637
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030686 - 90S preribosome (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsIPR028160 - Ribosome biogenesis protein Slx9-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589685.1 hypothetical protein SDJN03_15108, partial [Cucurbita argyrosperma subsp. sororia]3.4e-6183.44Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA
        MGKP S SDSKSK ERKF+KK+QFY+RVGET+A LNAQKTITK K RRRKRDLKAF+L++LSE LPGLKAPKQKTS  ELKVNCKSRLK +LKE KQMG 
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA

Query:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM
        VLNHPAFQADPL AIHLHLESTQPVEE KKKKTN+NGSKKRKEKK KA A+PSSMEM
Subjt:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM

XP_022922102.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata]2.0e-6183.44Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA
        MGKP S SDSKSK ERKF+KK+QFY+RVGET+A LNAQKTITKKK RRRKRDLKAF+L++LSE LPGLKAPKQKTS  ELKVNCKSRLK +LKE KQMG 
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA

Query:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM
        VLNHPAFQADPL AIHLHL+STQPVEE KKKKTN+NGSKKRKEKK KA A+PSSMEM
Subjt:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM

XP_022987345.1 putative ribosome biogenesis protein slx9-like [Cucurbita maxima]2.6e-6183.44Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA
        MGKP S SDSKSK ERKF+KK+QFY+RVGET+A LNAQKTITKKK RRRKRDLKAF+L++LSE LPGLK PKQKTS  ELKVNCKSRLK +LKE KQMG 
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA

Query:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM
        VLNHPAFQADPL AIHLHLESTQPVEE KKKKTN+NGSKKRKEKK KA A+PSSMEM
Subjt:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM

XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]1.0e-6284.71Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA
        MGKP S SDSKSK ERKF+KK+QFY+RVGET+A LNAQKTITKKK RRRKRDLKAF+L++LSE LPGLKAPKQKTS  ELKVNCKSRLK +LKE KQMG 
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA

Query:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM
        VLNHPAFQADPL AIHLHLESTQPVEEPKKKKTN+NGSKKRKEKK KA A+PSSMEM
Subjt:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM

XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]2.4e-5983.54Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKC-RRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMG
        MGKPVS SDSKSK ERKF+KKVQFY+RVGET++ LNAQKTITKKK  RRRKRDLKAF+LS+LSE LPGL+APKQK SAAELK+NCKSRLK ILKE+KQMG
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKC-RRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMG

Query:  AVLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM
         VLNHP FQADPLRAI LHLE TQP+EEP KKKTNKNGSKKRKEKK KA+ RPSSMEM
Subjt:  AVLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM

TrEMBL top hitse value%identityAlignment
A0A0A0L113 Uncharacterized protein2.2e-5881.01Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKK-CRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMG
        MGKPVS SD KSK ERKF+KKVQFY+RVGET+  LNAQK+ITKKK  RRRKRDLKAF+LS+LSE LPGL+A KQK SAAELK+NCKSRLK ILKE+KQMG
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKK-CRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMG

Query:  AVLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM
         VLNHP FQADPLRA+ LHLE TQP+EEPKKKK NKNGSKKRKEKK KA+A+PSSMEM
Subjt:  AVLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like4.4e-5982.28Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKK-CRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMG
        MGKPVS SD KSK ERKF+KKVQFY+RVGE++A LNAQK+ITKKK  RRRKRDLKAF+LS+LSE LPGL+A KQK SAAELK+NCKSRLK ILKE+KQMG
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKK-CRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMG

Query:  AVLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM
         VLNHP FQADPLRA+ LHLE TQP EEPKKKK NKNGSKKRKEKKLKA+ARPSSMEM
Subjt:  AVLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM

A0A6J1CYW4 putative ribosome biogenesis protein slx9-like isoform X12.2e-5882.17Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKK--KCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQM
        MGKPVS SDSKSK ERKF KKVQFY+RVGETV ALNAQKTI+K+  K R RK+ LKAF+L++LSE LPGL+APKQK+SAAELKVNCKSRLK ILKE+KQM
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKK--KCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQM

Query:  GAVLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSM
        G VLNHPAFQADPL+AIHLHLESTQPVEEPKKK TNKNGSKKRKEKKLKA+A P  M
Subjt:  GAVLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like9.6e-6283.44Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA
        MGKP S SDSKSK ERKF+KK+QFY+RVGET+A LNAQKTITKKK RRRKRDLKAF+L++LSE LPGLKAPKQKTS  ELKVNCKSRLK +LKE KQMG 
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA

Query:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM
        VLNHPAFQADPL AIHLHL+STQPVEE KKKKTN+NGSKKRKEKK KA A+PSSMEM
Subjt:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM

A0A6J1JDX4 putative ribosome biogenesis protein slx9-like1.2e-6183.44Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA
        MGKP S SDSKSK ERKF+KK+QFY+RVGET+A LNAQKTITKKK RRRKRDLKAF+L++LSE LPGLK PKQKTS  ELKVNCKSRLK +LKE KQMG 
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGA

Query:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM
        VLNHPAFQADPL AIHLHLESTQPVEE KKKKTN+NGSKKRKEKK KA A+PSSMEM
Subjt:  VLNHPAFQADPLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01640.1 unknown protein3.0e-3154Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTI-TKKKCRRRKRDLKAFNLSSLSESLPGLKA-PKQKTSAAELKVNCKSRLKIILKEKKQM
        MGKP  GS+  +K+++KF+KK+QFY +V +TV +L+ QK I  KKK R R++ LKA++L++LSE LP   A  K    A ELK+NCK R K++L E +++
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTI-TKKKCRRRKRDLKAFNLSSLSESLPGLKA-PKQKTSAAELKVNCKSRLKIILKEKKQM

Query:  GAVLNHPAFQADPLRAIHLHLESTQ-PVEEPKKKKTNKNGSKKRKEKKLK
          VL+HPAFQADP+ +I  HL S Q PVEE  KKKTN NGSKKR +KK K
Subjt:  GAVLNHPAFQADPLRAIHLHLESTQ-PVEEPKKKKTNKNGSKKRKEKKLK

AT2G01640.2 unknown protein3.0e-3154Show/hide
Query:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTI-TKKKCRRRKRDLKAFNLSSLSESLPGLKA-PKQKTSAAELKVNCKSRLKIILKEKKQM
        MGKP  GS+  +K+++KF+KK+QFY +V +TV +L+ QK I  KKK R R++ LKA++L++LSE LP   A  K    A ELK+NCK R K++L E +++
Subjt:  MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTI-TKKKCRRRKRDLKAFNLSSLSESLPGLKA-PKQKTSAAELKVNCKSRLKIILKEKKQM

Query:  GAVLNHPAFQADPLRAIHLHLESTQ-PVEEPKKKKTNKNGSKKRKEKKLK
          VL+HPAFQADP+ +I  HL S Q PVEE  KKKTN NGSKKR +KK K
Subjt:  GAVLNHPAFQADPLRAIHLHLESTQ-PVEEPKKKKTNKNGSKKRKEKKLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAACCAGTCTCTGGGTCGGATTCGAAATCTAAAACCGAACGCAAATTTGACAAGAAGGTCCAGTTTTATAAGAGAGTTGGAGAAACTGTTGCTGCCTTAAATGC
TCAAAAGACTATTACTAAGAAGAAATGTCGAAGACGTAAAAGGGACTTGAAGGCTTTCAATCTTTCTTCTCTATCAGAGTCTCTTCCTGGATTGAAGGCTCCTAAACAAA
AAACTTCTGCAGCCGAGTTAAAAGTAAACTGCAAGTCTAGGCTAAAGATTATTTTGAAGGAAAAAAAGCAAATGGGTGCAGTTCTTAATCACCCTGCATTCCAGGCGGAC
CCTTTGAGAGCTATTCATCTACATTTAGAGAGCACACAGCCAGTCGAGGAACCGAAGAAAAAGAAGACGAACAAAAATGGTAGCAAGAAAAGGAAAGAGAAAAAGTTGAA
AGCCGCTGCAAGACCTTCATCTATGGAGATGTGA
mRNA sequenceShow/hide mRNA sequence
CTCCTCTCTCTTATCTCTCTTGCTCCCCAAACGGCAGCCACTCTCTCATCTTCCGATCGCCGGCACCATCCCCCACCGCCACCACTTTTCTTTCTCCTTTTCTTTTCTCA
CTCTCTGCTGCAGCATCACACCGCCACGCCAAATCGTCTTCTACAGCAGCCCTCCATCAATCGAAATCTGCTCCGATCAATTTTTATCTCACTCTCTTTTTCTTTCTTTT
CTCCTCCATCTTCCTCTCGCCGGCACGGCCCCATTGGAAATTTAATTTTGCGTTGGTGAGCAGGAGGTCTCTATAATATAATTCCTTCTTTTGATTCAAGTCATCAGAAA
GCTTGCAAGTTGTAATTATGGGCAAACCAGTCTCTGGGTCGGATTCGAAATCTAAAACCGAACGCAAATTTGACAAGAAGGTCCAGTTTTATAAGAGAGTTGGAGAAACT
GTTGCTGCCTTAAATGCTCAAAAGACTATTACTAAGAAGAAATGTCGAAGACGTAAAAGGGACTTGAAGGCTTTCAATCTTTCTTCTCTATCAGAGTCTCTTCCTGGATT
GAAGGCTCCTAAACAAAAAACTTCTGCAGCCGAGTTAAAAGTAAACTGCAAGTCTAGGCTAAAGATTATTTTGAAGGAAAAAAAGCAAATGGGTGCAGTTCTTAATCACC
CTGCATTCCAGGCGGACCCTTTGAGAGCTATTCATCTACATTTAGAGAGCACACAGCCAGTCGAGGAACCGAAGAAAAAGAAGACGAACAAAAATGGTAGCAAGAAAAGG
AAAGAGAAAAAGTTGAAAGCCGCTGCAAGACCTTCATCTATGGAGATGTGACTCATCTCTCACGGGTTTTTTTGGCCATCTCAAACCACTAGCTGGGCCTATCTCTTTGA
TCAAGAGGTTAGAGGTTCGAGTTGTTGGCTGTAGCCGGCTCAATAGTCAATGTTCATTTTAATAATGTGTCAACTATCAACAACAGTTGAGCTTTCTTGAGGTTTAACTT
CCTCCTTCAATGATGCTAAAGGAGAAATATCTCATTGGAGGCATCTTGTTTTTTAATGCACAGGTAACCTTTTTGGAGCAATTGTTTGTAATTATTCATAGAATGGTGGT
GGAAGAGATATTATTCAACTAGTCATTTTCCATAATATTATACATTTTCTAACAATTTTAGATATTGCAATTAATTGACAATTTATCTCATGAATGTTGTGATTTTACTC
CACAATTATGAGTCGATAAAAAAAAAATGTACCGTGGAAAATATC
Protein sequenceShow/hide protein sequence
MGKPVSGSDSKSKTERKFDKKVQFYKRVGETVAALNAQKTITKKKCRRRKRDLKAFNLSSLSESLPGLKAPKQKTSAAELKVNCKSRLKIILKEKKQMGAVLNHPAFQAD
PLRAIHLHLESTQPVEEPKKKKTNKNGSKKRKEKKLKAAARPSSMEM