CuGenDBv2

Gene ID	Tan0001661
Organism	Trichosanthes anguina (Snake gourd v1)
Description	sigma factor binding protein 1, chloroplastic-like
Genome location	LG04:4281082..4282236
RNA-Seq Expression	Tan0001661
Synteny	Tan0001661
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6573793.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-50

79.74

Show/hide

Query:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV
        MD T KK SK RSRKS AADF+VVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+IAAA    RNNLQS  SASAFL DYQLL DDDL D DHRLV
Subjt:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV

Query:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL
        AGKIETAAY+SSV PPEDLV++NFDASFAE+F+ FLH+SS+ QTEMPG SALL
Subjt:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL

XP_022139181.1 uncharacterized protein LOC111010149 [Momordica charantia]

3.1e-45

69.93

Show/hide

Query:  MDFTGKKPSK--RSRKSAADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMI--AAAGHRNNLQSSASAFLDDYQLL--ADDDLVDRD--HR
        MD  G+K +K  RS+KSAADF+VVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+I  AAA  RN+LQ S+SA   D+QLL  ADDD +DRD  HR
Subjt:  MDFTGKKPSK--RSRKSAADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMI--AAAGHRNNLQSSASAFLDDYQLL--ADDDLVDRD--HR

Query:  LVAGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSAQTEMPGLSAL
        LV+G IE ++Y+SS+ PP+DL+LQNFDA+FA++F GFLH+SS QT+MPGL+ L
Subjt:  LVAGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSAQTEMPGLSAL

XP_022945563.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]

2.5e-50

79.74

Show/hide

Query:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV
        MD T KK SK RSRKS AADF+VVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+IAAA    RNNLQS  SASAFL DYQLL DDDL D DHRLV
Subjt:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV

Query:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL
        AGKIETAAY+SSV PPEDLV++NFDASFAE+F+ FLH+SS+ QTEMPG SALL
Subjt:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL

XP_022966872.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita maxima]

1.5e-50

80.39

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Query:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV
        MD T K+ SK RSRKS AADF+VVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+IAAA    RNNLQS  SASAFL DYQLL DDDL D DHRLV
Subjt:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV

Query:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL
        AGKIETAAY+SSV PPEDLV+QNFDASFAE+F+ FLHESS+ QTEMPG SALL
Subjt:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL

XP_023542375.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.0e-51

81.05

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Query:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV
        MD T KK SK RSRKS AADF+VVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+IAAA    RNNLQS  SASAFL DYQLL DDDL D DHRLV
Subjt:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV

Query:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL
        AGKIETAAY+SSV PPEDLV+QNFDASFAE+F+ FLHESS+ QTEMPG SALL
Subjt:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CBX0 uncharacterized protein LOC111010149

1.5e-45

69.93

Show/hide

Query:  MDFTGKKPSK--RSRKSAADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMI--AAAGHRNNLQSSASAFLDDYQLL--ADDDLVDRD--HR
        MD  G+K +K  RS+KSAADF+VVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+I  AAA  RN+LQ S+SA   D+QLL  ADDD +DRD  HR
Subjt:  MDFTGKKPSK--RSRKSAADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMI--AAAGHRNNLQSSASAFLDDYQLL--ADDDLVDRD--HR

Query:  LVAGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSAQTEMPGLSAL
        LV+G IE ++Y+SS+ PP+DL+LQNFDA+FA++F GFLH+SS QT+MPGL+ L
Subjt:  LVAGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSAQTEMPGLSAL

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like

1.2e-50

79.74

Show/hide

Query:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV
        MD T KK SK RSRKS AADF+VVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+IAAA    RNNLQS  SASAFL DYQLL DDDL D DHRLV
Subjt:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV

Query:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL
        AGKIETAAY+SSV PPEDLV++NFDASFAE+F+ FLH+SS+ QTEMPG SALL
Subjt:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL

A0A6J1GZT9 sigma factor binding protein 1, chloroplastic-like

1.9e-40

76.15

Show/hide

Query:  MDFTGKKPSKRSRKSAADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAAGHRNNLQSSASAFLDDYQLLADDDLVDRDHRLVAGKIET
        MD  GKKP KR++KSAA F+VVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FME+IAA     N QS  SAFL DYQ+L DD+L+DRDHRLVAGKIET
Subjt:  MDFTGKKPSKRSRKSAADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAAGHRNNLQSSASAFLDDYQLLADDDLVDRDHRLVAGKIET

Query:  AAYESSVDPPE-DLVLQNFDASFAELFRGF
        AAY+S V PPE D VLQNFDASF E+  GF
Subjt:  AAYESSVDPPE-DLVLQNFDASFAELFRGF

A0A6J1HP65 sigma factor binding protein 1, chloroplastic-like

7.1e-51

80.39

Show/hide

Query:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV
        MD T K+ SK RSRKS AADF+VVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+IAAA    RNNLQS  SASAFL DYQLL DDDL D DHRLV
Subjt:  MDFTGKKPSK-RSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAA--GHRNNLQS--SASAFLDDYQLLADDDLVDRDHRLV

Query:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL
        AGKIETAAY+SSV PPEDLV+QNFDASFAE+F+ FLHESS+ QTEMPG SALL
Subjt:  AGKIETAAYESSVDPPEDLVLQNFDASFAELFRGFLHESSA-QTEMPGLSALL

D1MWZ4 Sigma factor binding protein 1

6.0e-42

71.05

Show/hide

Query:  MDFTGKKPSKRSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAAGHRNNLQSSASAFLDDYQLLADDDLVDRDHRLVAGKIE
        M+ TGKK +KRSRKS AADF+VVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ A+A    NLQSSASA   DYQLL DDDLV      VAGK+E
Subjt:  MDFTGKKPSKRSRKS-AADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAAGHRNNLQSSASAFLDDYQLLADDDLVDRDHRLVAGKIE

Query:  TAAYESSV---DPPEDL-VLQNFDASFAELFRGFLHES-SAQTEMPGLSALL
        TAAYESSV    PP+DL VL N DASF  +F GF  +S +AQ EMPGL+ALL
Subjt:  TAAYESSV---DPPEDL-VLQNFDASFAELFRGFLHES-SAQTEMPGLSALL

SwissProt top hits

e value

%identity

Alignment

O80669 Sigma factor binding protein 2, chloroplastic

6.2e-04

55.56

Show/hide

Query:  PSKRSRKSAA---DFRVVYISSPMKVKTSASKFRSLVQKLTGQDS
        P K+ RKS       +V YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  PSKRSRKSAA---DFRVVYISSPMKVKTSASKFRSLVQKLTGQDS

Q9LDH1 Sigma factor binding protein 1, chloroplastic

1.6e-04

53.7

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Query:  KKPSKRSRKSAAD----------FRVVYISSPMKVKTSASKFRSLVQKLTGQDS
        KKPS  SRKS              +V YIS+PM+V+T ASKFR LVQ+LTGQD+
Subjt:  KKPSKRSRKSAAD----------FRVVYISSPMKVKTSASKFRSLVQKLTGQDS

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

4.4e-05

55.56

Show/hide

Query:  PSKRSRKSAA---DFRVVYISSPMKVKTSASKFRSLVQKLTGQDS
        P K+ RKS       +V YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  PSKRSRKSAA---DFRVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 1

1.2e-05

53.7

Show/hide

Query:  KKPSKRSRKSAAD----------FRVVYISSPMKVKTSASKFRSLVQKLTGQDS
        KKPS  SRKS              +V YIS+PM+V+T ASKFR LVQ+LTGQD+
Subjt:  KKPSKRSRKSAAD----------FRVVYISSPMKVKTSASKFRSLVQKLTGQDS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACTTTACCGGCAAGAAACCGTCGAAGAGAAGCAGGAAATCGGCCGCCGATTTCAGAGTCGTCTACATTTCCAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTT
CCGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCCGACGCCGAGAGGTTCATGGAAATGATCGCCGCAGCCGGTCATCGGAATAATCTTCAATCGTCGGCGTCGGCGT
TCCTCGATGATTACCAACTCCTCGCCGACGACGATTTAGTTGATCGCGATCATCGTCTTGTGGCTGGAAAGATCGAAACGGCGGCGTATGAATCGTCGGTGGATCCGCCG
GAGGATTTGGTTTTGCAGAACTTCGATGCCAGTTTTGCGGAACTGTTCCGTGGCTTTTTGCATGAATCTTCTGCCCAAACTGAGATGCCAGGTTTAAGTGCACTACTGTA
A

mRNA sequence

Show/hide mRNA sequence

GCTGTCACTTTTTTTTAAAAAAAAAATAATTATCAGTTAGCTGTCACATTTTCAACCATGTAATCTTTAATATATATATATTTATATATATACCGATAAGAGTTAGAGAG
ATTACGGGTCCTTTAAGGACATCTCGAAAGAACCTTCTATTGCCTTTTCCATTTTCTCTGTGTTTAATTTTCATTGGGAATTTTCCCTTTCTCATCCTCTTTATTTCCCC
CAAATTTTCCAACCCACCACTTTCCCGGAAACTGCCCTTGTTTGTTTCCCAAGAAAATTTCTCCCCTCGTCCGTACTTCCTTATATAAATCCACCTCCGGACACTTCCAT
CCTTCCACTCCAAATTCATTTATCAACCGTACCTCCATCAAAAGTGCAATTTCAACTCCTTAATTTCTCCTCTCCAAAGAATTTCAAAATCAAACAAACGAGACACACAT
AAAATTAAATAAAAGTAGAAATCCGATGGACTTTACCGGCAAGAAACCGTCGAAGAGAAGCAGGAAATCGGCCGCCGATTTCAGAGTCGTCTACATTTCCAGTCCGATGA
AGGTGAAAACCAGCGCCTCCAAGTTCCGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCCGACGCCGAGAGGTTCATGGAAATGATCGCCGCAGCCGGTCATCGGAAT
AATCTTCAATCGTCGGCGTCGGCGTTCCTCGATGATTACCAACTCCTCGCCGACGACGATTTAGTTGATCGCGATCATCGTCTTGTGGCTGGAAAGATCGAAACGGCGGC
GTATGAATCGTCGGTGGATCCGCCGGAGGATTTGGTTTTGCAGAACTTCGATGCCAGTTTTGCGGAACTGTTCCGTGGCTTTTTGCATGAATCTTCTGCCCAAACTGAGA
TGCCAGGTTTAAGTGCACTACTGTAAATTCGGCGTACGTTATCTTTTCTCCATTTCTTTTCTTTTTATAATTTTTTATTTTATTGAATAATGTGACGTGGATTTGTATAG
GTGGATGAATCGTCGTCACATTTTCTTTTGTCTATAATAATATTATTTTTAATATAATATACGTTAATTTTCAGAAATTTATTTGGAGTTTGTTGCGTGTGTGTGTTTTT
TTAAAAGCTTATAGTTGGAAGTATATATATATGAGGTTGAAAGAGTTTAAAGTAA

Protein sequence

Show/hide protein sequence

MDFTGKKPSKRSRKSAADFRVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMIAAAGHRNNLQSSASAFLDDYQLLADDDLVDRDHRLVAGKIETAAYESSVDPP
EDLVLQNFDASFAELFRGFLHESSAQTEMPGLSALL

Tan0001661 (gene) of Snake gourd v1 genome