CuGenDBv2

Gene ID	Tan0001664
Organism	Trichosanthes anguina (Snake gourd v1)
Description	LysM domain-containing protein
Genome location	LG06:70285503..70285960
RNA-Seq Expression	Tan0001664
Synteny	Tan0001664
Gene Ontology terms	NA
InterPro domains	IPR018392 - LysM domain IPR036779 - LysM domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574776.1 hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia]

8.2e-28

76.67

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Query:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR
        MASST C SVFI MAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D NPQIQDSDDVFPGL+IKITP++NSRKLLFR
Subjt:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR

KAG7013356.1 hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-28

77.78

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Query:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR
        MASST C SVFIFMAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D NPQIQDSDDVFPGL+IKITP++NSRKLLFR
Subjt:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR

KGN46208.1 hypothetical protein Csa_005039 [Cucumis sativus]

2.1e-23

73.49

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Query:  YSVFI-FMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTM-NSRKLL
        +SVF+  MALI+++ASAES     +PCD+IYVVKEGE+LHTISAKCGDPFI+D NP IQDSDDVFPGL+I+ITPT+ NSRKLL
Subjt:  YSVFI-FMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTM-NSRKLL

XP_022959284.1 uncharacterized protein LOC111460313 [Cucurbita moschata]

1.6e-28

77.78

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Query:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR
        MASST C SVFIFMAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D NPQIQDSDDVFPGL+IKITP++NSRKLLFR
Subjt:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR

XP_023006696.1 uncharacterized protein LOC111499354 [Cucurbita maxima]

2.2e-28

76.67

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Query:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR
        MASS  CYSVFIFMAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D NPQIQDSDDVFPGL+IKITP++NSRKL FR
Subjt:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9P3 LysM domain-containing protein

1.0e-23

73.49

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Query:  YSVFI-FMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTM-NSRKLL
        +SVF+  MALI+++ASAES     +PCD+IYVVKEGE+LHTISAKCGDPFI+D NP IQDSDDVFPGL+I+ITPT+ NSRKLL
Subjt:  YSVFI-FMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTM-NSRKLL

A0A5D3DLK6 Uncharacterized protein

2.5e-22

72.29

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Query:  YSVFI-FMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTM-NSRKLL
        +SVFI  MALI+++ASAES     +PC++IYVVKEGE+LHTISAKC DPFI+D NP IQDSDDVFPGL+I+ITPT+ NSRKLL
Subjt:  YSVFI-FMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTM-NSRKLL

A0A6A1W7P5 LysM domain-containing protein

1.5e-19

54.26

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Query:  MASSTFCYSVFIFMALILILASAESGDKQ-----------HQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMN
        M+    CY+  +F+A++L+L+  ESGD+            ++PCDEIYVV+EGE+LH+IS KCGDP+I++ENP I D DDVFPGLVIKITP  N
Subjt:  MASSTFCYSVFIFMALILILASAESGDKQ-----------HQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMN

A0A6J1H7L7 uncharacterized protein LOC111460313

8.0e-29

77.78

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Query:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR
        MASST C SVFIFMAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D NPQIQDSDDVFPGL+IKITP++NSRKLLFR
Subjt:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR

A0A6J1KYG6 uncharacterized protein LOC111499354

1.0e-28

76.67

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Query:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR
        MASS  CYSVFIFMAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D NPQIQDSDDVFPGL+IKITP++NSRKL FR
Subjt:  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G52790.1 peptidoglycan-binding LysM domain-containing protein

4.5e-16

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Query:  CDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTM
        CDEIY VKEGE+L TIS KCGDP+I++ NP I D DD+FPGL+I+ITP++
Subjt:  CDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTM

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein

1.3e-15

66.67

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Query:  QPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKI
        +PC+E+YVV EG++LH+IS KCGDPFI++ NP I D DDVFPGL+IK+
Subjt:  QPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein

2.5e-19

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Query:  STFCYSVFIFMALILILASAESGDKQH--------QPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKL
        S +C S  + ++LIL+L+  E+             +PC+EIY+V EGE+LHTI  KCGDPFI++ NP I D DDVFPGLV+KI P   +RKL
Subjt:  STFCYSVFIFMALILILASAESGDKQH--------QPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKL

Sequences

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CDS sequence

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ATGGCTTCCTCAACATTCTGCTACTCTGTTTTCATTTTCATGGCGCTCATACTGATCCTCGCCTCTGCAGAATCCGGCGACAAGCAGCATCAGCCTTGCGACGAGATCTA
CGTCGTCAAAGAAGGCGAGTCGCTGCACACGATCAGCGCCAAGTGCGGCGATCCCTTCATAATCGACGAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGAC
TTGTGATTAAAATTACGCCAACCATGAACTCCAGGAAGTTGTTATTCAGGTGA

mRNA sequence

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GTGGTAGCCTCCAATTCCTTTTCGTCTGCTCCACTTCTCGAAACCGCCATAACTGACCGCTTTCCTCCACCTCCTCTCCCTCTTTATATACCAAATTCCAAATTCCAAAT
CCCCAAAATCAAATTTCATTTTTCCCTCTCTCTCTCTTCTCTCTCATGGCTTCCTCAACATTCTGCTACTCTGTTTTCATTTTCATGGCGCTCATACTGATCCTCGCCTC
TGCAGAATCCGGCGACAAGCAGCATCAGCCTTGCGACGAGATCTACGTCGTCAAAGAAGGCGAGTCGCTGCACACGATCAGCGCCAAGTGCGGCGATCCCTTCATAATCG
ACGAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTTGTGATTAAAATTACGCCAACCATGAACTCCAGGAAGTTGTTATTCAGGTGAGGAGATGTAGCT
AGCTAGCCGAATTCCCGT

Protein sequence

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MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR

Tan0001664 (gene) of Snake gourd v1 genome