CuGenDBv2

Gene ID	Tan0001672
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L32, chloroplastic
Genome location	LG07:35312777..35313184
RNA-Seq Expression	Tan0001672
Synteny	Tan0001672
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015934 - large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002677 - Ribosomal protein L32p IPR011332 - Zinc-binding ribosomal protein IPR044958 - Ribosomal protein L32p, plant/cyanobacteria type

Homology

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GenBank top hits

e value

%identity

Alignment

YP_004841833.1 ribosomal protein L32 [Cucumis melo subsp. melo]

2.9e-17

100

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

YP_009317434.1 ribosomal protein L32 [Coccinia grandis]

2.9e-17

100

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

YP_009420843.1 ribosomal protein L32 [Citrullus colocynthis]

5.0e-17

98.11

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTS+SKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

YP_009525233.1 ribosomal protein L32 [Hodgsonia macrocarpa]

8.5e-17

98.11

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSF GDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

YP_009752891.1 ribosomal protein L32 [Baijiania yunnanensis]

6.5e-17

98.11

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWK+KGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU59 50S ribosomal protein L32, chloroplastic

1.4e-17

100

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

A0A249RZB6 50S ribosomal protein L32, chloroplastic

1.4e-17

100

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

A0A2Z2CGE0 50S ribosomal protein L32, chloroplastic

1.4e-17

100

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

A0A6H0ERY7 50S ribosomal protein L32, chloroplastic

1.4e-17

100

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

A0A6M3RU49 50S ribosomal protein L32, chloroplastic

1.4e-17

100

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

SwissProt top hits

e value

%identity

Alignment

A0A383 50S ribosomal protein L32, chloroplastic

5.9e-13

77.36

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTS SKKRIRKNIWK KG   ALKAFSL KSLSTGNS+SF   ++NK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

A0ZZ83 50S ribosomal protein L32, chloroplastic

7.8e-13

86.96

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSF
        MAVPKKRTS SKKRIRKN+WK KG  AALKAFSLAKSLSTGNS+SF
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSF

Q0ZIX0 50S ribosomal protein L32, chloroplastic

5.9e-13

86.96

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSF
        MAVPKKRTS+SKKRI KNIWK KG RAALKAF+LAKSLSTGNS+SF
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSF

Q2QD42 50S ribosomal protein L32, chloroplastic

5.6e-19

96.23

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNS+SF GDKSNK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

Q332S9 50S ribosomal protein L32, chloroplastic

5.9e-13

79.25

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK
        MAVPKKRTSISKKRIRKNIWK KG  AALKA SL KSLSTGNS+SF   ++NK
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

Arabidopsis top hits

e value

%identity

Alignment

ATCG01020.1 ribosomal protein L32

1.4e-12

82.61

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Query:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSF
        MAVPKKRTSISKKRIRK IWK KG   +LKAFSL KSLSTGNS+SF
Subjt:  MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSF

Sequences

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CDS sequence

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ATGGCAGTTCCAAAAAAGCGCACTTCTATATCAAAAAAACGGATTCGGAAAAATATTTGGAAAAGCAAAGGGCGTCGGGCAGCGTTGAAAGCTTTTTCGTTAGCAAAATC
TCTTTCAACGGGAAATTCACAAAGTTTTTTGGGGGACAAATCAAATAAATAA

mRNA sequence

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AAATGGATAATAAATAGTAAAGAGTAAAGAACAATTCGTTTTGAACAATAGATGTCTTTCACATCCAACTATAGTAATGAATAATCAATTATAATTTTTTAATGGCAGTT
CCAAAAAAGCGCACTTCTATATCAAAAAAACGGATTCGGAAAAATATTTGGAAAAGCAAAGGGCGTCGGGCAGCGTTGAAAGCTTTTTCGTTAGCAAAATCTCTTTCAAC
GGGAAATTCACAAAGTTTTTTGGGGGACAAATCAAATAAATAATTAAACATTGGAATAATCTGAATCGGTTTGACTCAAAAAACAGCCTAGTAGAGGTTGGTTTATAATT
TTTATTATTTAATATAATTTTTTTGATTATGAAAATTGATATTTATTTTATTATATATAATTATTTAAATAATTATAT

Protein sequence

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MAVPKKRTSISKKRIRKNIWKSKGRRAALKAFSLAKSLSTGNSQSFLGDKSNK

Tan0001672 (gene) of Snake gourd v1 genome