| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG6594716.1 DNA-directed RNA polymerases IV and V subunit 4, partial [Cucurbita argyrosperma subsp. sororia] | 3.1e-105 | 92.24 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
MSEKGEKG+PVQKKPGKSSLKSSA+KDASLKGKDDSLSK KKGRKVQFDAQGSVDAQIN+S+K+SGKNGDLGKGGK +NGGKA V+KE QPLELKIEQEL
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
Query: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
PKNVKCQCLMDCEA+QLLQG+QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGV DSE+CVIANVCPDT DEVFALVPSLKSK
Subjt: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
Query: RSKLSEPLNNVLSELAKLK
RSKL+EPLNNVLSELAKLK
Subjt: RSKLSEPLNNVLSELAKLK
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| XP_022926857.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Cucurbita moschata] | 5.0e-103 | 90.41 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
MSEKGEKG+PVQKKPGKSSLKSSA+KDASLKGKDDSLSK KKGRKVQFDAQGSVDAQIN+S+K+SGKNGDLGKGGK +NGGKA V+KE QPLELKIEQEL
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
Query: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
PKNVKCQCLMDCEA+QLLQG+QDQM LLSADPTIKIPTSFDRGLQYAKRANHYVNTE VRPVLETLKKYGV DSE+CVIANVCPDT DEVF+LVPSLKSK
Subjt: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
Query: RSKLSEPLNNVLSELAKLK
RSKL+EPLNNVL ELAKLK
Subjt: RSKLSEPLNNVLSELAKLK
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| XP_023003382.1 DNA-directed RNA polymerases IV and V subunit 4-like [Cucurbita maxima] | 2.0e-104 | 91.78 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
MSEKGEKG+PVQKKPGKSSLKS A+KDASLKGKDDSLSK KKGRKVQFDAQGSVDA IN+SMK+ GKNGDLGKGGK +NGGKA V+KE QPLELKIEQEL
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
Query: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
PKNVKCQCLMDCEA+QLLQG+QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGV DSE+CVIANVCPDTIDEVFALVPSLKSK
Subjt: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
Query: RSKLSEPLNNVLSELAKLK
RSKL+EPLNNVLSELAKLK
Subjt: RSKLSEPLNNVLSELAKLK
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| XP_023517145.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Cucurbita pepo subsp. pepo] | 2.0e-104 | 91.78 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
MSEKGEKG+PVQKKPGKSSLKSSA+KDASLKGKDDSLSK KKGRKVQFDAQGSVDAQIN+S+K+SGKNGDLGKGGK +NGGKA V+KE QPLELKIE EL
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
Query: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
PKNVKCQCLMDCEA+QLLQG+QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGV DSE+CVIANVCPDT DEVFALVPSLKSK
Subjt: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
Query: RSKLSEPLNNVLSELAKLK
RSKL+EPLNNVLSELAKLK
Subjt: RSKLSEPLNNVLSELAKLK
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| XP_023517147.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Cucurbita pepo subsp. pepo] | 6.1e-101 | 89.95 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
MSEKGEKG+PVQKKPGKSSLKSSA+KD GKDDSLSK KKGRKVQFDAQGSVDAQIN+S+K+SGKNGDLGKGGK +NGGKA V+KE QPLELKIE EL
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
Query: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
PKNVKCQCLMDCEA+QLLQG+QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGV DSE+CVIANVCPDT DEVFALVPSLKSK
Subjt: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
Query: RSKLSEPLNNVLSELAKLK
RSKL+EPLNNVLSELAKLK
Subjt: RSKLSEPLNNVLSELAKLK
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3B2C2 DNA-directed RNA polymerases IV and V subunit 4 isoform X1 | 1.5e-97 | 88.13 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
MSEKGEKG+ VQKKP KSSLKSSA KDASLKGKDDSLSK KKGRKVQFDAQGSVDA + SMKYSGKNGD+GKGGK N KA VAKEPQ LELKIEQEL
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
Query: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
PKNVKCQCLMDCEA+QLLQG+QDQMV LSADPTIKIPTSFDRGLQYAKRANHYVN ESVRPVLETLKKYG+TDSE+CVIANVCPDT DEVFAL+PSLK+K
Subjt: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
Query: RSKLSEPLNNVLSELAKLK
RSKLSEPLNNVLSELAK+K
Subjt: RSKLSEPLNNVLSELAKLK
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| A0A6J1EGC4 DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 | 7.2e-100 | 88.58 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
MSEKGEKG+PVQKKPGKSSLKSSA+KD GKDDSLSK KKGRKVQFDAQGSVDAQIN+S+K+SGKNGDLGKGGK +NGGKA V+KE QPLELKIEQEL
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
Query: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
PKNVKCQCLMDCEA+QLLQG+QDQM LLSADPTIKIPTSFDRGLQYAKRANHYVNTE VRPVLETLKKYGV DSE+CVIANVCPDT DEVF+LVPSLKSK
Subjt: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
Query: RSKLSEPLNNVLSELAKLK
RSKL+EPLNNVL ELAKLK
Subjt: RSKLSEPLNNVLSELAKLK
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| A0A6J1EJD9 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 | 2.4e-103 | 90.41 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
MSEKGEKG+PVQKKPGKSSLKSSA+KDASLKGKDDSLSK KKGRKVQFDAQGSVDAQIN+S+K+SGKNGDLGKGGK +NGGKA V+KE QPLELKIEQEL
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
Query: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
PKNVKCQCLMDCEA+QLLQG+QDQM LLSADPTIKIPTSFDRGLQYAKRANHYVNTE VRPVLETLKKYGV DSE+CVIANVCPDT DEVF+LVPSLKSK
Subjt: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
Query: RSKLSEPLNNVLSELAKLK
RSKL+EPLNNVL ELAKLK
Subjt: RSKLSEPLNNVLSELAKLK
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| A0A6J1IMM9 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 | 6.8e-98 | 88.58 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
MSEKGEKG P+ KKPGKSSLKSS+ KDASLKGKDDSL KPKKGRKVQFDAQGSVDAQIN SMKYSGKNG+LGKGGK GG AKEPQPLELKIEQEL
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
Query: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
PKNVKCQCLMDCEA+Q+LQG+QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVL+TLKKYGV DSE+CV+ANVCPDT DEVFAL+PSLKSK
Subjt: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
Query: RSKLSEPLNNVLSELAKLK
RSKLSEPLNNVLSELAK+K
Subjt: RSKLSEPLNNVLSELAKLK
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| A0A6J1KMD1 DNA-directed RNA polymerases IV and V subunit 4-like | 9.8e-105 | 91.78 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
MSEKGEKG+PVQKKPGKSSLKS A+KDASLKGKDDSLSK KKGRKVQFDAQGSVDA IN+SMK+ GKNGDLGKGGK +NGGKA V+KE QPLELKIEQEL
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQINVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIEQEL
Query: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
PKNVKCQCLMDCEA+QLLQG+QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGV DSE+CVIANVCPDTIDEVFALVPSLKSK
Subjt: PKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSK
Query: RSKLSEPLNNVLSELAKLK
RSKL+EPLNNVLSELAKLK
Subjt: RSKLSEPLNNVLSELAKLK
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| O15514 DNA-directed RNA polymerase II subunit RPB4 | 2.5e-04 | 28.44 | Show/hide |
Query: QCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSKRSKLSE
+ L++ E LL+ + Q SA+ ++ F + L Y R + + N E++ V L + + EL +AN+CP+T +E AL+PSL+ + E
Subjt: QCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSKRSKLSE
Query: PLNNVLSEL
L +L ++
Subjt: PLNNVLSEL
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| O48890 DNA-directed RNA polymerase II subunit 4 | 1.9e-20 | 39.55 | Show/hide |
Query: KEPQPLELKIEQELPKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDT
+E ELKI E +K +CLM+CE S +L+ +Q+ +S DP ++ F++ LQY KR + Y N ++VR V E L ++ +T+ ELCV+ N+CP+T
Subjt: KEPQPLELKIEQELPKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDT
Query: IDEVFALVPSLKSK-RSKLSEPLNNVLSELAKLK
++E A+VPSLK+K R+ E + +L++L+ +K
Subjt: IDEVFALVPSLKSK-RSKLSEPLNNVLSELAKLK
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| Q54S04 DNA-directed RNA polymerase II subunit rpb4 | 3.4e-06 | 33.33 | Show/hide |
Query: SFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSKRSKLSEPLNNVLSELAKLK
+F + L YA++ + Y N S++ V L K + + E+ +AN+CP+ DE +L+PSLK + L +L EL+ L+
Subjt: SFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSKRSKLSEPLNNVLSELAKLK
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| Q6DBA5 DNA-directed RNA polymerases IV and V subunit 4 | 4.2e-36 | 45.5 | Show/hide |
Query: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQ---INVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIE
MSEKG KG KSSLKS KD GKD S +K KKGRK+ FD Q + A +NVS K GK P L
Subjt: MSEKGEKGYPVQKKPGKSSLKSSAAKDASLKGKDDSLSKPKKGRKVQFDAQGSVDAQ---INVSMKYSGKNGDLGKGGKVVNGGKAPVAKEPQPLELKIE
Query: QELPKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSL
++LP+N +C+MDCEA Q+L G++ Q+V LS DP+IKIP S+DR L Y + HY N +SVR VLE LK YG++D E+CVIAN +++DEV A +PSL
Subjt: QELPKNVKCQCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSL
Query: KSKRSKLSEPLNNVLSELAKLK
K+K+ +++PL + L EL+KLK
Subjt: KSKRSKLSEPLNNVLSELAKLK
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| Q9D7M8 DNA-directed RNA polymerase II subunit RPB4 | 2.5e-04 | 28.44 | Show/hide |
Query: QCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSKRSKLSE
+ L++ E LL+ + Q SA+ ++ F + L Y R + + N E++ V L + + EL +AN+CP+T +E AL+PSL+ + E
Subjt: QCLMDCEASQLLQGVQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVTDSELCVIANVCPDTIDEVFALVPSLKSKRSKLSE
Query: PLNNVLSEL
L +L ++
Subjt: PLNNVLSEL
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