CuGenDBv2

Gene ID	Tan0001703
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA repair protein XRCC4-like
Genome location	LG02:29134428..29148418
RNA-Seq Expression	Tan0001703
Synteny	Tan0001703
Gene Ontology terms	GO:0006303 - double-strand break repair via nonhomologous end joining (biological process) GO:0006310 - DNA recombination (biological process) GO:0010165 - response to X-ray (biological process) GO:0051103 - DNA ligation involved in DNA repair (biological process) GO:0051351 - positive regulation of ligase activity (biological process) GO:0005958 - DNA-dependent protein kinase-DNA ligase 4 complex (cellular component) GO:0032807 - DNA ligase IV complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0016874 - ligase activity (molecular function)
InterPro domains	IPR010585 - DNA repair protein XRCC4 IPR014751 - DNA repair protein XRCC4-like, C-terminal IPR038051 - XRCC4-like, N-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571850.1 DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia]

4.1e-111

87.61

Show/hide

Query:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MD IRHTCLKLEVPTNAQP+   SIFVKGTWYQHRF+LSITDGLNAWTCHATEDEVRLRA QWDQEPSDYV+LAERYLGFQQP SVYGFAD GNGDKRLS
Subjt:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTF+KEGMKLEWRWKCR  SDNK TT GILDFLMDANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+I EEKVEFETA+YAKFLNVLN KKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN
          KQTTTSSKLKQ+++Y SDKTE+FD +SDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

XP_008455175.1 PREDICTED: DNA repair protein XRCC4 [Cucumis melo]

1.4e-111

89.32

Show/hide

Query:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MD IRHTCLKLEVPTNAQP+E +SIFVKGTW  HRF+LSITDGL+AWTCHATEDEVRLRA QWDQEPSDYVALAERYLGFQQPGS+YGFADAGNG KRLS
Subjt:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+P SDNK TT  IL+FLMDANIRLSEEVVRKTQS ERLK ESEKCLAQSEKI +EKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN
        LSKQTTT SKLKQEE YSSDKTE+FD ESDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

XP_022141947.1 DNA repair protein XRCC4-like [Momordica charantia]

3.7e-112

89.79

Show/hide

Query:  MDTIRHTCLKLEVPTNAQPNESASI-FVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRL
        MD IRHTCLKLEVP+ AQ NES SI FVKGTW++HRF+LSITDGLNAWTCHATEDEVRLRA QWDQEPSDYVALAER+LGFQQPGSVYGFADAGNGDKRL
Subjt:  MDTIRHTCLKLEVPTNAQPNESASI-FVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRL

Query:  SWTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRD
        SWTFDKEGMKLEWRW C+P SDNK TT GILDFLMDANIRLSEEVVRKTQSFERLKVESE CLAQSEKI  EKVEFETAIYAKFLNVLN+KKAKLR YRD
Subjt:  SWTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRD

Query:  QLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN
        QLSKQTT SSKLKQEE+YSSDKTETFD ESDAEKN
Subjt:  QLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

XP_022952201.1 DNA repair protein XRCC4 [Cucurbita moschata]

4.1e-111

87.61

Show/hide

Query:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MD IRHTCLKLEVPTNAQP+   SIFVKGTWYQHRF+LSITDGLNAWTCHATEDEVRLRA QWDQEPSDYV+LAERYLGFQQP SVYGFAD GNGDKRLS
Subjt:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTF+KEGMKLEWRWKCR  SDNK TT GILDFLMDANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+I EEKVEFETA+YAKFLNVLN KKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN
          KQTTTSSKLKQ+++Y SDKTE+FD +SDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

XP_038888651.1 DNA repair protein XRCC4 [Benincasa hispida]

1.8e-111

88.46

Show/hide

Query:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MD  RHTCLKLEVPTNAQPN+ +SIFVKGTW  H F+LSITDGLNAW+CHATEDEV LRA QWDQEPSDYVALAERYLGFQQPGSVYGF DAGNGD+RLS
Subjt:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+P SDNK TT GILDFLMDANIRLSEEVVRKTQ FERLK ESE+CLAQSEKI +EKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN
        LSKQTTT SKLKQEE YSSDKTE+FD ESDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BZW1 DNA repair protein XRCC4

6.7e-112

89.32

Show/hide

Query:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MD IRHTCLKLEVPTNAQP+E +SIFVKGTW  HRF+LSITDGL+AWTCHATEDEVRLRA QWDQEPSDYVALAERYLGFQQPGS+YGFADAGNG KRLS
Subjt:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+P SDNK TT  IL+FLMDANIRLSEEVVRKTQS ERLK ESEKCLAQSEKI +EKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN
        LSKQTTT SKLKQEE YSSDKTE+FD ESDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

A0A5A7SK69 DNA repair protein XRCC4

6.7e-112

89.32

Show/hide

Query:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MD IRHTCLKLEVPTNAQP+E +SIFVKGTW  HRF+LSITDGL+AWTCHATEDEVRLRA QWDQEPSDYVALAERYLGFQQPGS+YGFADAGNG KRLS
Subjt:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+P SDNK TT  IL+FLMDANIRLSEEVVRKTQS ERLK ESEKCLAQSEKI +EKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN
        LSKQTTT SKLKQEE YSSDKTE+FD ESDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

A0A6J1CL88 DNA repair protein XRCC4-like

1.8e-112

89.79

Show/hide

Query:  MDTIRHTCLKLEVPTNAQPNESASI-FVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRL
        MD IRHTCLKLEVP+ AQ NES SI FVKGTW++HRF+LSITDGLNAWTCHATEDEVRLRA QWDQEPSDYVALAER+LGFQQPGSVYGFADAGNGDKRL
Subjt:  MDTIRHTCLKLEVPTNAQPNESASI-FVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRL

Query:  SWTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRD
        SWTFDKEGMKLEWRW C+P SDNK TT GILDFLMDANIRLSEEVVRKTQSFERLKVESE CLAQSEKI  EKVEFETAIYAKFLNVLN+KKAKLR YRD
Subjt:  SWTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRD

Query:  QLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN
        QLSKQTT SSKLKQEE+YSSDKTETFD ESDAEKN
Subjt:  QLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

A0A6J1GJL0 DNA repair protein XRCC4

2.0e-111

87.61

Show/hide

Query:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MD IRHTCLKLEVPTNAQP+   SIFVKGTWYQHRF+LSITDGLNAWTCHATEDEVRLRA QWDQEPSDYV+LAERYLGFQQP SVYGFAD GNGDKRLS
Subjt:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTF+KEGMKLEWRWKCR  SDNK TT GILDFLMDANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+I EEKVEFETA+YAKFLNVLN KKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN
          KQTTTSSKLKQ+++Y SDKTE+FD +SDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

A0A6J1I7A5 DNA repair protein XRCC4 isoform X1

1.7e-110

87.18

Show/hide

Query:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MD IRHTCLKLEVPTNAQP+   SIFVKGTWYQHRF+LSITDGLNAWTCHATEDEVRLRA QWDQEPSDYV LAERYLGFQQP SVY FAD GNGDKRLS
Subjt:  MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTF+KEGMKLEWRWKCR  SDNK TT GILDFLMDANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+I EEKVEFETA+YAKFLNVLN KKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN
          KQTTTSSKLKQ+++Y SDKTE+FD +SDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

SwissProt top hits

e value

%identity

Alignment

Q13426 DNA repair protein XRCC4

5.9e-04

24.89

Show/hide

Query:  SASIFVKGTW---YQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVA-LAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCR
        S + F++ +W    +  F +++TDG +AWT   +E E+   A     E   YV  L +  L    P  VY F    N  K   + F ++ +K       R
Subjt:  SASIFVKGTW---YQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVA-LAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCR

Query:  PTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCL-------AQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSK
          S N        + + +      + +       E L+ E+E+ L        + EK    K   ET +Y +F+ VLN KK K+R   ++L        K
Subjt:  PTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCL-------AQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSK

Query:  -LKQE------EDYSSDKTETFDHESDAE
         +KQE       + ++D+   +D  +D E
Subjt:  -LKQE------EDYSSDKTETFDHESDAE

Q682V0 DNA repair protein XRCC4

7.3e-71

60.61

Show/hide

Query:  RHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFD
        +HTCL+LE+ + A P     IFVKGTW+  RF++S+TDG ++W C+ATE+EV  RA QWDQ  S+Y+ LAE+YLGFQQP SVY F+DA  G KRLSWTF+
Subjt:  RHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFD

Query:  KEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQ
        KEG KLEWRWKC+P+ D+K  T GILDFLM+ANIRLSEEVV KT+SFE+++ E+E+CLAQ EK+ +EK EFE+A YAKFL+VLNAKKAKLR  RD+    
Subjt:  KEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQ

Query:  TTTSSKLKQEEDYSSDKTETFDH-ESDAEKN
            S    EE+ S+DK E+F+   SD EK+
Subjt:  TTTSSKLKQEEDYSSDKTETFDH-ESDAEKN

Arabidopsis top hits

e value

%identity

Alignment

AT1G61410.1 DNA double-strand break repair and VJ recombination XRCC4

4.3e-18

56.86

Show/hide

Query:  MDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDH-ESDAE
        M+ANIRLSEEVV KT+SFE++K E+E+CLAQ EK+ +EK EFE A YAKFL+VLNAKKAKLR  RD+        S    EE+ S+ K E+F+   SD E
Subjt:  MDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDH-ESDAE

Query:  KN
        ++
Subjt:  KN

AT3G23100.1 homolog of human DNA ligase iv-binding protein XRCC4

5.2e-72

60.61

Show/hide

Query:  RHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFD
        +HTCL+LE+ + A P     IFVKGTW+  RF++S+TDG ++W C+ATE+EV  RA QWDQ  S+Y+ LAE+YLGFQQP SVY F+DA  G KRLSWTF+
Subjt:  RHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFD

Query:  KEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQ
        KEG KLEWRWKC+P+ D+K  T GILDFLM+ANIRLSEEVV KT+SFE+++ E+E+CLAQ EK+ +EK EFE+A YAKFL+VLNAKKAKLR  RD+    
Subjt:  KEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQ

Query:  TTTSSKLKQEEDYSSDKTETFDH-ESDAEKN
            S    EE+ S+DK E+F+   SD EK+
Subjt:  TTTSSKLKQEEDYSSDKTETFDH-ESDAEKN

AT3G23100.2 homolog of human DNA ligase iv-binding protein XRCC4

5.2e-72

60.61

Show/hide

Query:  RHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFD
        +HTCL+LE+ + A P     IFVKGTW+  RF++S+TDG ++W C+ATE+EV  RA QWDQ  S+Y+ LAE+YLGFQQP SVY F+DA  G KRLSWTF+
Subjt:  RHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFD

Query:  KEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQ
        KEG KLEWRWKC+P+ D+K  T GILDFLM+ANIRLSEEVV KT+SFE+++ E+E+CLAQ EK+ +EK EFE+A YAKFL+VLNAKKAKLR  RD+    
Subjt:  KEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQ

Query:  TTTSSKLKQEEDYSSDKTETFDH-ESDAEKN
            S    EE+ S+DK E+F+   SD EK+
Subjt:  TTTSSKLKQEEDYSSDKTETFDH-ESDAEKN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACACAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCGCAACCGAACGAAAGCGCCTCCATCTTCGTCAAAGGCACTTGGTATCAGCACCGCTTCGA
GCTCTCCATTACCGATGGCCTCAACGCTTGGACGTGCCATGCAACGGAGGACGAGGTTCGTTTGCGCGCTACACAATGGGATCAAGAACCGTCGGACTATGTGGCGTTAG
CCGAGCGCTATTTAGGGTTTCAGCAGCCTGGTTCGGTTTATGGTTTTGCCGATGCTGGAAATGGGGACAAGAGGCTTTCTTGGACATTTGACAAGGAAGGGATGAAGTTA
GAATGGCGATGGAAGTGTCGACCAACGTCTGATAATAAGATAACAACAACAGGAATATTGGACTTTCTCATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAA
AACGCAATCGTTTGAGAGGCTGAAAGTGGAGTCTGAGAAGTGTTTGGCTCAAAGCGAGAAGATTCGTGAAGAAAAGGTGGAGTTTGAAACTGCAATTTATGCAAAGTTTC
TAAATGTCTTGAACGCAAAGAAGGCAAAACTTAGAGAGTACAGAGATCAGCTTTCAAAACAGACTACTACTAGCAGCAAACTGAAACAAGAAGAGGACTACTCCTCTGAT
AAAACCGAAACTTTCGACCATGAAAGCGATGCAGAAAAGAACTGA

mRNA sequence

Show/hide mRNA sequence

CTGACATTTAGCAACCTTCCGCCATCAGCATTTTCAGAGCGCGAAGTCAAAAGAGCGCCATGGACACAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCG
CAACCGAACGAAAGCGCCTCCATCTTCGTCAAAGGCACTTGGTATCAGCACCGCTTCGAGCTCTCCATTACCGATGGCCTCAACGCTTGGACGTGCCATGCAACGGAGGA
CGAGGTTCGTTTGCGCGCTACACAATGGGATCAAGAACCGTCGGACTATGTGGCGTTAGCCGAGCGCTATTTAGGGTTTCAGCAGCCTGGTTCGGTTTATGGTTTTGCCG
ATGCTGGAAATGGGGACAAGAGGCTTTCTTGGACATTTGACAAGGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCGACCAACGTCTGATAATAAGATAACAACAACA
GGAATATTGGACTTTCTCATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACGCAATCGTTTGAGAGGCTGAAAGTGGAGTCTGAGAAGTGTTTGGCTCA
AAGCGAGAAGATTCGTGAAGAAAAGGTGGAGTTTGAAACTGCAATTTATGCAAAGTTTCTAAATGTCTTGAACGCAAAGAAGGCAAAACTTAGAGAGTACAGAGATCAGC
TTTCAAAACAGACTACTACTAGCAGCAAACTGAAACAAGAAGAGGACTACTCCTCTGATAAAACCGAAACTTTCGACCATGAAAGCGATGCAGAAAAGAACTGACGAGGA
ATATTGTTGAGACTTAAAAGCATGTAATTTGTATGACTAGCTGATCAGGGAGTGTTACAAGAAATAAGTTGGATTTGCTATCTGTAATGCAGTATGCTGAATTTTTTCTT
TTTATTACAACAAATATGGAGAGTGAAGATTTGAATCTCTGACTTTAAGAAAAAGAGTAAACGTCTTTACTGTTGAACTATGCTCATGTCGACATTATACAAGTAGGGAA
CTGTGTGACATACTATAGTTTGAAAAATATTTATTTTTCTTGGATCA

Protein sequence

Show/hide protein sequence

MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKL
EWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSD
KTETFDHESDAEKN

Tan0001703 (gene) of Snake gourd v1 genome