; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001709 (gene) of Snake gourd v1 genome

Gene IDTan0001709
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationLG01:3124571..3127299
RNA-Seq ExpressionTan0001709
SyntenyTan0001709
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038789 - Protein LOW PSII ACCUMULATION 2 like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600161.1 Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.5e-8586.43Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQIIHHSPSSF RKPYHLP  PLHFPSK +F IKSQNPSESEKPISK VDDAP+ T      SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQR
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIK
        ASIIRRSP+EKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEK+K
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIK

XP_022941727.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata]9.3e-8886.7Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQIIHHSPSSF RKPYHLP  PLHFPSK +F IKSQNPSESEKPISK VDDAP+ T      SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQR
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG
        ASIIRRSP+EKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEK+KG
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG

Query:  DKS
        DKS
Subjt:  DKS

XP_022973018.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]3.9e-8685.71Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQIIHHSPSSF RKPYHLP TPL+FPSK +F IKSQ+PSESEKPISK VDDA + T      SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQR
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG
        ASIIRRSP+EKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEK+KG
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG

Query:  DKS
        DKS
Subjt:  DKS

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]1.9e-8887.19Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQIIHHSPSSF RKPYHLP TPLHFPSK +F IKSQNPSESEKPISK VDDAP+ T      SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQR
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG
        ASIIRRSP+EKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEK+KG
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG

Query:  DKS
        DKS
Subjt:  DKS

XP_038899637.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]1.6e-8788.67Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQI+HHSPSSF RKPYHLPN  L+FPSK +F I SQNPSESEKPISK VDDAPLATSSK SSSS QGFGSSSSQS TTSKSSPKA     KQKGKRQR
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG
        ASIIRRSP+EKPVFVG+VDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEKIK 
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG

Query:  DKS
        +KS
Subjt:  DKS

TrEMBL top hitse value%identityAlignment
A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic1.0e-8484.24Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQI+HHSPSSF +KPYHLPN  LHF SK +F IKSQNPSESEKPISKIVDDAP+ATSSK S+SS QGFGSSS QS +TSKS+PK+     KQKGKRQR
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG
        ASIIRRSP+EKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEKIK 
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG

Query:  DKS
        +KS
Subjt:  DKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 23.0e-8483.74Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQI+HHSPSSF +KPYHLPN  LHF SK +F IKSQNPSESEKPISKIVDDAP+ATSSK  +SS+QGFGSSS QS +TSKS+PK+     KQKGKRQR
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG
        ASIIRRSP+EKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEKIK 
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG

Query:  DKS
        +KS
Subjt:  DKS

A0A6J1CH98 protein LOW PSII ACCUMULATION 2, chloroplastic2.0e-8385.85Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQN--PSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKR
        MALQII HSPSSF RKPY LP  PL FPSKR F IKSQN   SESEK ISK+VDDA +ATSSKASSSSAQGFGSS +QS  TSK SPKA P KGKQKGKR
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQN--PSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKR

Query:  QRASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKI
        QRASIIRRSP+EKPVFVG+VDEEAAKEQ RNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKF VKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK 
Subjt:  QRASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKI

Query:  KGDKS
        KG+KS
Subjt:  KGDKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic4.5e-8886.7Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQIIHHSPSSF RKPYHLP  PLHFPSK +F IKSQNPSESEKPISK VDDAP+ T      SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQR
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG
        ASIIRRSP+EKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEK+KG
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG

Query:  DKS
        DKS
Subjt:  DKS

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic1.9e-8685.71Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQIIHHSPSSF RKPYHLP TPL+FPSK +F IKSQ+PSESEKPISK VDDA + T      SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQR
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG
        ASIIRRSP+EKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEK+KG
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG

Query:  DKS
        DKS
Subjt:  DKS

SwissProt top hitse value%identityAlignment
F4KDA6 Protein LPA21.0e-4155.45Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQI  HSP SF+ +PYHL  T        +F IK QN S+ E       D     + SK SSSS  GFGS +S S    K S   A   G +KGK +R
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG
          + RR+P+EKPVF+ E     A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGV KY+QNEK+KG
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG

Query:  DK
         +
Subjt:  DK

Arabidopsis top hitse value%identityAlignment
AT5G51545.1 low psii accumulation27.4e-4355.45Show/hide
Query:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR
        MALQI  HSP SF+ +PYHL  T        +F IK QN S+ E       D     + SK SSSS  GFGS +S S    K S   A   G +KGK +R
Subjt:  MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQR

Query:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG
          + RR+P+EKPVF+ E     A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGV KY+QNEK+KG
Subjt:  ASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKG

Query:  DK
         +
Subjt:  DK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCAACAGAAAACCCTATCATCTTCCCAACACACCTCTCCATTTCCCCTCAAAACGCCAATTCTTCATCAAATC
GCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAATTGTCGACGATGCTCCACTTGCGACCTCATCCAAGGCATCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCAT
CGTCTCAATCGATGACTACGAGCAAATCAAGTCCAAAGGCTGCACCCTTCAAGGGAAAGCAGAAGGGTAAGCGGCAGAGAGCATCCATTATTCGGCGCTCGCCGCTGGAG
AAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAGCTAAGGAGCAGAGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGA
GGGGATTGTGCTTGCGGCATCCGGTTTCTTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCTCTGTTTGTTGCTGGAA
CTGTTGCATATGGAGTTTCGAAGTATCTTCAGAATGAGAAAATTAAAGGTGATAAATCATAA
mRNA sequenceShow/hide mRNA sequence
GCAATTTTGGGAACTTTGTACTGAAGAGAAAAATAGATTTCATAATTCTAAACTGAACCAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCACCATTCTC
CTTCTTCTTTCAACAGAAAACCCTATCATCTTCCCAACACACCTCTCCATTTCCCCTCAAAACGCCAATTCTTCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCC
ATTTCGAAAATTGTCGACGATGCTCCACTTGCGACCTCATCCAAGGCATCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCATCGTCTCAATCGATGACTACGAGCAAATC
AAGTCCAAAGGCTGCACCCTTCAAGGGAAAGCAGAAGGGTAAGCGGCAGAGAGCATCCATTATTCGGCGCTCGCCGCTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATG
AAGAAGCAGCTAAGGAGCAGAGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTGCTTGCGGCATCCGGTTTC
TTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATATGGAGTTTCGAAGTATCT
TCAGAATGAGAAAATTAAAGGTGATAAATCATAATTTAATCTTTTGATTGACGTTCTGCATTTGGTGTGAAGACCTGAAAAATCTGAATTGCCTATAGATTGTGTTTATA
CTAAGTATGTCATTTGACTGATAAACCGAGGATGGAAATTTTTTTAGCTTAGAAGCAAATGAGATGCTATTGTTGGATACTAGGGAACAACTTGCCATCAATTATTAGTT
TCTTTGAGTTTCACGTCTAATTATGTTTTTGATGTTCAATGATG
Protein sequenceShow/hide protein sequence
MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLE
KPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKGDKS