; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001753 (gene) of Snake gourd v1 genome

Gene IDTan0001753
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationLG11:16375432..16376821
RNA-Seq ExpressionTan0001753
SyntenyTan0001753
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33871.1 retrotransposon protein [Cucumis melo subsp. melo]1.8e-2051.26Show/hide
Query:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN
        +YT RIK  VDKL+ A +S++DEEILVHTLNGL   F+ F TSIRTRSG++ L+ELH LL +EE  + KT  +E+IPTAM       H +NRGRGR    
Subjt:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN

Query:  LRGRATQSYNPNGDYTSHA
           R   + NPN + +S++
Subjt:  LRGRATQSYNPNGDYTSHA

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.7e-2353.72Show/hide
Query:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN
        +YT RIK  VDKL+ A +S++DEEILVHTLNGL   F+ FRTSIRTRSG++ L+ELH LL +EE +I KT  +E+IPTAM     P H  +RGRGR    
Subjt:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN

Query:  LRGRATQSYNPNGDYTSHASN
           R   + NPN + +S++SN
Subjt:  LRGRATQSYNPNGDYTSHASN

TYJ95794.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-2053.57Show/hide
Query:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN
        +YT RIK  VDKL+ A +S++DEEILVHTLNGL   F+ FRTSIRTRSG++ L+ELH LL ++E  + KT  +E+IPTAM     P H  +RGRGR  F+
Subjt:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN

Query:  LRGRATQSYNPN
          G    +  PN
Subjt:  LRGRATQSYNPN

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.3e-2039.39Show/hide
Query:  SSPLFLLSNICNLVPIRLDSTNYVLLEYT-----------GRI---------------------------------------------------------
        +S LFLLSNICNLVPIRLDSTNYVL +Y            G I                                                         
Subjt:  SSPLFLLSNICNLVPIRLDSTNYVLLEYT-----------GRI---------------------------------------------------------

Query:  ---------KEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRG
                 K  V KL+ A IS+ DEEILVHTLNGLS  F+ F TSIRTRSG++ L+ELH LL  EE  + KT  +E+IPTAM     P H  N GRG
Subjt:  ---------KEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRG

XP_016902697.1 PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]4.3e-2252.07Show/hide
Query:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN
        +YT RIK  VDKL  A +S++DEEILVHTLNGL   F+ FRTSIRTR+G++ L+ELH LL +EE ++ KT  +E+IPTAM     P H  +RGRGR    
Subjt:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN

Query:  LRGRATQSYNPNGDYTSHASN
           R   + NPN + +S++SN
Subjt:  LRGRATQSYNPNGDYTSHASN

TrEMBL top hitse value%identityAlignment
A0A1S4E394 uncharacterized protein LOC1079918252.1e-2252.07Show/hide
Query:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN
        +YT RIK  VDKL  A +S++DEEILVHTLNGL   F+ FRTSIRTR+G++ L+ELH LL +EE ++ KT  +E+IPTAM     P H  +RGRGR    
Subjt:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN

Query:  LRGRATQSYNPNGDYTSHASN
           R   + NPN + +S++SN
Subjt:  LRGRATQSYNPNGDYTSHASN

A0A5A7UZE5 Putative mitochondrial protein3.2e-2353.72Show/hide
Query:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN
        +YT RIK  VDKL+ A +S++DEEILVHTLNGL   F+ FRTSIRTRSG++ L+ELH LL +EE +I KT  +E+IPTAM     P H  +RGRGR    
Subjt:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN

Query:  LRGRATQSYNPNGDYTSHASN
           R   + NPN + +S++SN
Subjt:  LRGRATQSYNPNGDYTSHASN

A0A5A7VGG0 Retrotransposon protein2.6e-2036.52Show/hide
Query:  SSTTAIVTTTNQSV-SSPLFLLSNICNLVPIRLDSTNYVLLEYT-----------GRI------------------------------------------
        +S   + +++N  V +S LFLLSNICNLVPIRLDSTNY+L +Y            G I                                          
Subjt:  SSTTAIVTTTNQSV-SSPLFLLSNICNLVPIRLDSTNYVLLEYT-----------GRI------------------------------------------

Query:  ------------------------KEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVV
                                K  +DKL  A IS++DEEILVHTLNGL   F+ FRTSIRTRSG++ L+ELH LL +EE  + KT  +E+IPTAM  
Subjt:  ------------------------KEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVV

Query:  VKYPSHSNNRGRGRHSFNLRGRATQSYNPN
             H ++RGRGR  F+  G    + +PN
Subjt:  VKYPSHSNNRGRGRHSFNLRGRATQSYNPN

A0A5D3BA30 Putative mitochondrial protein5.2e-2153.57Show/hide
Query:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN
        +YT RIK  VDKL+ A +S++DEEILVHTLNGL   F+ FRTSIRTRSG++ L+ELH LL ++E  + KT  +E+IPTAM     P H  +RGRGR  F+
Subjt:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN

Query:  LRGRATQSYNPN
          G    +  PN
Subjt:  LRGRATQSYNPN

E5GBM9 Retrotransposon protein8.8e-2151.26Show/hide
Query:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN
        +YT RIK  VDKL+ A +S++DEEILVHTLNGL   F+ F TSIRTRSG++ L+ELH LL +EE  + KT  +E+IPTAM       H +NRGRGR    
Subjt:  EYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKMINKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFN

Query:  LRGRATQSYNPNGDYTSHA
           R   + NPN + +S++
Subjt:  LRGRATQSYNPNGDYTSHA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTTCTTCCTCAACAACTGCTATTGTCACTACTACCAATCAATCTGTGTCTTCTCCCCTATTTCTTTTATCCAACATATGCAACTTGGTCCCAATCAGATTGGA
TTCAACAAACTATGTACTACTGGAATATACGGGCAGAATCAAAGAATTTGTTGACAAGCTTTCTACCGCCCCTATTTCTATTGATGATGAAGAGATATTAGTACACACTT
TGAATGGATTATCTGAGATTTTCAGTGTTTTTCGAACCTCCATTCGAACCAGAAGCGGATCTCTGTTGCTTAAAGAACTCCATGCACTCCTCAATGCTGAAGAAAAGATG
ATCAACAAAACCCAAAAATTAGAGAGTATTCCTACTGCTATGGTTGTCGTAAAATACCCTTCCCATTCGAATAACAGAGGACGTGGGAGACACTCCTTCAACCTGAGAGG
GCGTGCGACGCAATCCTACAACCCTAATGGTGATTATACTTCACACGCGTCCAACACCCACTTTTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTTTCTTCCTCAACAACTGCTATTGTCACTACTACCAATCAATCTGTGTCTTCTCCCCTATTTCTTTTATCCAACATATGCAACTTGGTCCCAATCAGATTGGA
TTCAACAAACTATGTACTACTGGAATATACGGGCAGAATCAAAGAATTTGTTGACAAGCTTTCTACCGCCCCTATTTCTATTGATGATGAAGAGATATTAGTACACACTT
TGAATGGATTATCTGAGATTTTCAGTGTTTTTCGAACCTCCATTCGAACCAGAAGCGGATCTCTGTTGCTTAAAGAACTCCATGCACTCCTCAATGCTGAAGAAAAGATG
ATCAACAAAACCCAAAAATTAGAGAGTATTCCTACTGCTATGGTTGTCGTAAAATACCCTTCCCATTCGAATAACAGAGGACGTGGGAGACACTCCTTCAACCTGAGAGG
GCGTGCGACGCAATCCTACAACCCTAATGGTGATTATACTTCACACGCGTCCAACACCCACTTTTCGTAGGGAAATCGAACTACAAGTCTTGTTGTAAATGGTAATGTTT
CTATCCTTTCAAAACTTTCTCAATCCATTGTAGTGCAAACTAAGCTTGATGGGTCCAAAAGGATTTCACATCTTTCACTCGTTAGAAATGAAGATAAAAGGTGTTGATCA
TTACCATTTTAGAAGATAGAGATGTAGCGTGGATGCTTACAGGGGCATTGGGGGTATGTACCCCAACTGTGCGTTAGTGGTGGATGTTGAAAGCACAACATCAGTGGAG
Protein sequenceShow/hide protein sequence
MAFSSSTTAIVTTTNQSVSSPLFLLSNICNLVPIRLDSTNYVLLEYTGRIKEFVDKLSTAPISIDDEEILVHTLNGLSEIFSVFRTSIRTRSGSLLLKELHALLNAEEKM
INKTQKLESIPTAMVVVKYPSHSNNRGRGRHSFNLRGRATQSYNPNGDYTSHASNTHFS