; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001779 (gene) of Snake gourd v1 genome

Gene IDTan0001779
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG04:48080558..48082901
RNA-Seq ExpressionTan0001779
SyntenyTan0001779
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.3e-1843.51Show/hide
Query:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT
        + + KLL+EG+ IP SRKGLGYKSPE +RI RKGKEKV D+NHITV+EVD ++E +  ++RT  F      VAR    +RL  T+ + +     S   R 
Subjt:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT

Query:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ
        S   R+T  +   E +GI  T +  +PS  +
Subjt:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]7.3e-1438.03Show/hide
Query:  QEKNNRTGDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRNSKLQNKKRNQVTKKPVYAVREDENLFRPRQLVTLEEFFPMNFLSKGKEEVFEVVVCHVI
        QEK     +++EGWT+VTRRKKR+ +  QKE R +R++++ +K Q  K+ + T+K      ED++  + ++LVTL +FFP  FL   ++E   VV CH I
Subjt:  QEKNNRTGDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRNSKLQNKKRNQVTKKPVYAVREDENLFRPRQLVTLEEFFPMNFLSKGKEEVFEVVVCHVI

Query:  GTTDDLSCSYETTTELGNS---FSFSIEDLLSLPQAAKSKLL
           ++ +    +  E G S     F++ DLLSLPQ  K  L+
Subjt:  GTTDDLSCSYETTTELGNS---FSFSIEDLLSLPQAAKSKLL

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.6e-1939.75Show/hide
Query:  SYETTTELGNSFSFSIE----DLLSLPQ--AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGS
        +Y+   ++G  F+  IE     +   P+  + + KLL+EG+ IP SRKGLGYKSPE +RI RKGKEKV D NHITV+EVD + EK+   +RT  F     
Subjt:  SYETTTELGNSFSFSIE----DLLSLPQ--AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGS

Query:  LVARPSALQRLGTTKVKEERSPLVSGPTRTSGLMRITLGVPAGEREGITSTPVVVRPSTLQ
         VAR    +RL  T+V+ +     S   R S   R+T+   + + +GI    +  RPS  +
Subjt:  LVARPSALQRLGTTKVKEERSPLVSGPTRTSGLMRITLGVPAGEREGITSTPVVVRPSTLQ

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-0142.42Show/hide
Query:  QEKNNRTGDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRNSKLQNKKRNQVTKKPVYAVREDENL
        +EK     +++EGW VVTRRKKR+ +  QKESR +R+++R +K +  K+ + T+K    ++ DENL
Subjt:  QEKNNRTGDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRNSKLQNKKRNQVTKKPVYAVREDENL

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.6e-1941.98Show/hide
Query:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT
        + + KLL+EG+ IP SRKGLGYKSPE +RI RKGKEKV D+NHIT++E D ++EK+  ++RT  F      VAR    ++L  T+ + +     S   R 
Subjt:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT

Query:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ
        S   R+T  +   E +GI  T +  +PS  +
Subjt:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]1.5e-1944.27Show/hide
Query:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT
        + + KLL+EG+ IP SRKGLGYKSPE +RI RKGK+KV D NHITV+EVD ++EK+   +RT  F      VAR    +RL  T+ K +     S   R 
Subjt:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT

Query:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ
        S   R+T  +   E +GI  T +  +PS  +
Subjt:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]2.0e-1943.51Show/hide
Query:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT
        + + KLL+EG+ IP SRKGLGYKSPE +RI RKGKEKV D+NHITV+EVD ++EK+   +RT  F      VAR    +RL  T+ + +     S   + 
Subjt:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT

Query:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ
        S   R+T  +   E +GI  T +  +PS  +
Subjt:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein3.7e-1939.75Show/hide
Query:  SYETTTELGNSFSFSIE----DLLSLPQ--AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGS
        +Y+   ++G  F+  IE     +   P+  + + KLL+EG+ IP SRKGLGYKSPE +RI RKGKEKV D NHITV+EVD + EK+   +RT  F     
Subjt:  SYETTTELGNSFSFSIE----DLLSLPQ--AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGS

Query:  LVARPSALQRLGTTKVKEERSPLVSGPTRTSGLMRITLGVPAGEREGITSTPVVVRPSTLQ
         VAR    +RL  T+V+ +     S   R S   R+T+   + + +GI    +  RPS  +
Subjt:  LVARPSALQRLGTTKVKEERSPLVSGPTRTSGLMRITLGVPAGEREGITSTPVVVRPSTLQ

A0A5A7TJZ7 Retrotransposon gag protein1.2e-0142.42Show/hide
Query:  QEKNNRTGDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRNSKLQNKKRNQVTKKPVYAVREDENL
        +EK     +++EGW VVTRRKKR+ +  QKESR +R+++R +K +  K+ + T+K    ++ DENL
Subjt:  QEKNNRTGDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRNSKLQNKKRNQVTKKPVYAVREDENL

A0A5A7TJZ7 Retrotransposon gag protein3.7e-1941.98Show/hide
Query:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT
        + + KLL+EG+ IP SRKGLGYKSPE +RI RKGKEKV D+NHIT++E D ++EK+  ++RT  F      VAR    ++L  T+ + +     S   R 
Subjt:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT

Query:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ
        S   R+T  +   E +GI  T +  +PS  +
Subjt:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ

A0A5A7UMY2 Reverse transcriptase domain-containing protein7.4e-2044.27Show/hide
Query:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT
        + + KLL+EG+ IP SRKGLGYKSPE +RI RKGK+KV D NHITV+EVD ++EK+   +RT  F      VAR    +RL  T+ K +     S   R 
Subjt:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT

Query:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ
        S   R+T  +   E +GI  T +  +PS  +
Subjt:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ

A0A5D3BSG5 Uncharacterized protein6.2e-1943.51Show/hide
Query:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT
        + + KLL+EG+ IP SRKGLGYKSPE +RI RKGKEKV D+NHITV+EVD ++E +  ++RT  F      VAR    +RL  T+ + +     S   R 
Subjt:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT

Query:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ
        S   R+T  +   E +GI  T +  +PS  +
Subjt:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ

A0A5D3BSG5 Uncharacterized protein3.5e-1438.03Show/hide
Query:  QEKNNRTGDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRNSKLQNKKRNQVTKKPVYAVREDENLFRPRQLVTLEEFFPMNFLSKGKEEVFEVVVCHVI
        QEK     +++EGWT+VTRRKKR+ +  QKE R +R++++ +K Q  K+ + T+K      ED++  + ++LVTL +FFP  FL   ++E   VV CH I
Subjt:  QEKNNRTGDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRNSKLQNKKRNQVTKKPVYAVREDENLFRPRQLVTLEEFFPMNFLSKGKEEVFEVVVCHVI

Query:  GTTDDLSCSYETTTELGNS---FSFSIEDLLSLPQAAKSKLL
           ++ +    +  E G S     F++ DLLSLPQ  K  L+
Subjt:  GTTDDLSCSYETTTELGNS---FSFSIEDLLSLPQAAKSKLL

A0A5D3DXC7 Reverse transcriptase domain-containing protein9.6e-2043.51Show/hide
Query:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT
        + + KLL+EG+ IP SRKGLGYKSPE +RI RKGKEKV D+NHITV+EVD ++EK+   +RT  F      VAR    +RL  T+ + +     S   + 
Subjt:  AAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHFGSLVARPSALQRLGTTKVKEERSPLVSGPTRT

Query:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ
        S   R+T  +   E +GI  T +  +PS  +
Subjt:  SGLMRITLGVPAGEREGITSTPVVVRPSTLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGATGAACCCTCGAGTAAGAATTCTCAAGAGGAAGGCATCCAAAAGCAGTACATCCAAGAAAAGAATAACCGGACCGGAGATGAAAATGAAGGTTGGACTGTCGT
GACTCGTCGCAAGAAGCGACAACAAAGTTATGCACAGAAGGAATCGCGACTATTCCGACACCATAAGAGAAACAGTAAGTTGCAAAACAAGAAAAGAAACCAGGTCACGA
AGAAGCCTGTTTACGCCGTGAGGGAAGACGAAAACCTCTTCCGCCCACGACAACTGGTAACTTTGGAGGAATTCTTCCCAATGAATTTCCTAAGTAAAGGCAAGGAGGAG
GTGTTTGAGGTAGTTGTGTGTCACGTTATCGGTACAACTGATGATCTTTCATGCTCGTATGAGACGACAACAGAGTTAGGAAACTCATTCTCATTCAGCATAGAGGACTT
GTTGTCACTCCCCCAAGCAGCAAAGAGTAAGCTCCTGAAAGAAGGTTATACCATACCAGCATCACGGAAAGGACTGGGATACAAGTCTCCTGAGTTGGTCCGCATAATAA
GAAAAGGGAAGGAAAAGGTGGCAGACGCAAACCACATAACAGTAGAAGAGGTAGATGATTTAGATGAAAAGAAAAACGTCACCCGAAGGACTTTTGTTTTTAGCCATTTC
GGGTCGTTGGTGGCACGACCTTCAGCCCTCCAACGATTGGGCACCACTAAAGTAAAAGAAGAACGGTCACCTCTCGTTTCTGGTCCCACTCGAACCTCAGGCCTCATGAG
GATAACGCTAGGTGTGCCTGCTGGTGAAAGAGAAGGTATAACATCCACTCCAGTCGTAGTACGACCATCAACATTGCAAAGTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGATGAACCCTCGAGTAAGAATTCTCAAGAGGAAGGCATCCAAAAGCAGTACATCCAAGAAAAGAATAACCGGACCGGAGATGAAAATGAAGGTTGGACTGTCGT
GACTCGTCGCAAGAAGCGACAACAAAGTTATGCACAGAAGGAATCGCGACTATTCCGACACCATAAGAGAAACAGTAAGTTGCAAAACAAGAAAAGAAACCAGGTCACGA
AGAAGCCTGTTTACGCCGTGAGGGAAGACGAAAACCTCTTCCGCCCACGACAACTGGTAACTTTGGAGGAATTCTTCCCAATGAATTTCCTAAGTAAAGGCAAGGAGGAG
GTGTTTGAGGTAGTTGTGTGTCACGTTATCGGTACAACTGATGATCTTTCATGCTCGTATGAGACGACAACAGAGTTAGGAAACTCATTCTCATTCAGCATAGAGGACTT
GTTGTCACTCCCCCAAGCAGCAAAGAGTAAGCTCCTGAAAGAAGGTTATACCATACCAGCATCACGGAAAGGACTGGGATACAAGTCTCCTGAGTTGGTCCGCATAATAA
GAAAAGGGAAGGAAAAGGTGGCAGACGCAAACCACATAACAGTAGAAGAGGTAGATGATTTAGATGAAAAGAAAAACGTCACCCGAAGGACTTTTGTTTTTAGCCATTTC
GGGTCGTTGGTGGCACGACCTTCAGCCCTCCAACGATTGGGCACCACTAAAGTAAAAGAAGAACGGTCACCTCTCGTTTCTGGTCCCACTCGAACCTCAGGCCTCATGAG
GATAACGCTAGGTGTGCCTGCTGGTGAAAGAGAAGGTATAACATCCACTCCAGTCGTAGTACGACCATCAACATTGCAAAGTGGATGA
Protein sequenceShow/hide protein sequence
MNDEPSSKNSQEEGIQKQYIQEKNNRTGDENEGWTVVTRRKKRQQSYAQKESRLFRHHKRNSKLQNKKRNQVTKKPVYAVREDENLFRPRQLVTLEEFFPMNFLSKGKEE
VFEVVVCHVIGTTDDLSCSYETTTELGNSFSFSIEDLLSLPQAAKSKLLKEGYTIPASRKGLGYKSPELVRIIRKGKEKVADANHITVEEVDDLDEKKNVTRRTFVFSHF
GSLVARPSALQRLGTTKVKEERSPLVSGPTRTSGLMRITLGVPAGEREGITSTPVVVRPSTLQSG