; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0001874 (gene) of Snake gourd v1 genome

Gene IDTan0001874
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNA-binding protein 1-like
Genome locationLG01:112621510..112623621
RNA-Seq ExpressionTan0001874
SyntenyTan0001874
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037746.1 RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-8470.12Show/hide
Query:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN
        M   TRME   DQ +GRKIFVGGLSAELTEDDFK YFEKFGR+TDVVVM DS T RPRGFGFITFDS++SVDSVLQNNFHELNGRRVEVKRAIPKKGN N
Subjt:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN

Query:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL
        GG+IS       KSPL  S V P YPYY   YTVYPGF  FP YGPG  LYGS+ YGNWF PSFG    P AWY PNF GMFPPP+++SL+ PTYSS GL
Subjt:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL

Query:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA
        S  VAG   A  RRKV+    T  ++NMSADAVPF  KD+A
Subjt:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA

XP_022940975.1 RNA-binding protein 1-like [Cucurbita moschata]1.7e-8370.12Show/hide
Query:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN
        M   T ME   DQ +GRKIFVGGLSAELTEDDFK YFEKFGR+TDVVVM DS T RPRGFGFITFDS++SVDSVLQNNFHELNGRRVEVKRAIPKKGN N
Subjt:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN

Query:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL
        GG+IS       KSPL  S V P YPYY   YTVYPGF  FP YGPG  LYGS+ YGNWF PSFG    P AWY PNF GMFPPP++NSL+ PTYSS GL
Subjt:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL

Query:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA
        S  VAG   A  RRKV+    T  ++NMSADAVPF  KD+A
Subjt:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA

XP_022982410.1 RNA-binding protein 1-like [Cucurbita maxima]4.7e-8671.78Show/hide
Query:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN
        M   TRME   DQ +GRKIFVGGLSAELTEDDFK YFEKFGR+TDVVVM DS T RPRGFGFITFDS++SVDSVLQNNFHELNGRRVEVKRAIPKKGN N
Subjt:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN

Query:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL
        GG+IS       KSPL  S V P YPYY   YTVYPGF  FP YGPG  LYGS+ YGNWF PSFG    P AWYGPNF GMFPPP++NSL+ PTYSS GL
Subjt:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL

Query:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA
        S  VAG   A  RRKVE    T  ++NMSADAVPF  KDRA
Subjt:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA

XP_023524364.1 RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]2.6e-8470.54Show/hide
Query:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN
        M   TRME   DQ +GRKIFVGGLSAELTEDDFK YFEKFGR+TDVVVM DS T RPRGFGFITFDS++SVDSVLQNNFHELNGRRVEVKRAIPKKGN N
Subjt:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN

Query:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL
        GG+IS       KSPL  S V P YPYY   YTVYPGF  FP YGPG  LYGS+ YGNWF PSFG    P AWY PNF GMFPPP++NSL+ PTYSS GL
Subjt:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL

Query:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA
        S  VAG   A  RRKVE    +  ++NMSADAVPF  KD+A
Subjt:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA

XP_038898856.1 RNA-binding protein 1-like [Benincasa hispida]4.4e-10079.75Show/hide
Query:  STRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGY
        +TRMENNNDQ +GRKIFVGGLSAELTED+FK YFEKFG+ITDVVVMHDS TNRPRGFGFITF+S+ESVDSVLQ+NFHELNGRRVEVKRAIPKKGN NGG+
Subjt:  STRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGY

Query:  ISNARTRGGKSPLPNS--IVPPPYPYYGSVYTVYPGFPHFPSY-GPGVELYGSNHYGNWFPPSFG----PGAWYGPNF--VGMFPPPYRNSLINPTYSSK
        I NART+GGKSPLPNS   VP PYPYYGS Y VYPGF  FP Y GPGV+LYGS+ YGNWFPPSFG     G WYGPNF  VG+FPPPYRNSLI P YSSK
Subjt:  ISNARTRGGKSPLPNS--IVPPPYPYYGSVYTVYPGFPHFPSY-GPGVELYGSNHYGNWFPPSFG----PGAWYGPNF--VGMFPPPYRNSLINPTYSSK

Query:  GLSGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDR
        GLS T  GNG+  TRR  EIKQ T GKR MSADAVPFQIKDR
Subjt:  GLSGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDR

TrEMBL top hitse value%identityAlignment
A0A0A0L563 RRM domain-containing protein4.6e-7968.88Show/hide
Query:  STRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGY
        +TRM+NNNDQ +GRKIFVGGLSAELTE++F+ YFE FG+ITDVVVMHDS TNRPRGFGF+TF+S+ESVDSVLQ NFHELNGRRVEVKRAIPKKGN NG +
Subjt:  STRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGY

Query:  ISNARTRGGKSPL--PNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPS----FGPGAWYGPNF--VGMFPPPYRNSLINPTYSSKG
        I NA  R  KSPL   N  VP PYPYYGS Y +YPGF HFP YG  V+ YGSN YGNWFPP        G W+GPNF  VGM PP  RNSL++P   SKG
Subjt:  ISNARTRGGKSPL--PNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPS----FGPGAWYGPNF--VGMFPPPYRNSLINPTYSSKG

Query:  LSGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDR
        +    + NG+A+TR   EIKQ T GKR MSADA PFQIKDR
Subjt:  LSGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDR

A0A5N6R9D7 Uncharacterized protein9.0e-4348.36Show/hide
Query:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN
        + KS+  +N ++Q + +KIFVGGLSA LTE++FK YF++FGR+TDVVVMHDS T+RPRGFGFITFDS ESV++V+QN+FHELNGR VEVKRA+PK+ N  
Subjt:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN

Query:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSY-GPGVELYGSNHYGNWFPP--SFGPGA----------WYGPNFV--GMFPPPYRNS
             N R  GG+        P  +P Y   Y + PG+  FP + G G  LYG++ Y  W+P   S G G+          WYGP  +  G FP P  ++
Subjt:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSY-GPGVELYGSNHYGNWFPP--SFGPGA----------WYGPNFV--GMFPPPYRNS

Query:  LINPTYSSKGLSG
         I P Y + G+ G
Subjt:  LINPTYSSKGLSG

A0A6J1C724 RNA-binding protein 1-like3.1e-5958.61Show/hide
Query:  STRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGY
        S RME+NNDQS+G+KIFVGGL ++LTE++FK YFEKFG+ITDVVVM DS TNRPRGFGFITFDS+ESV+ VLQNNFHELNGRRVEVKRA+PK  N N   
Subjt:  STRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGY

Query:  ISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHY------GNWFPPSFGPGAWYGPNFV--GMFPPPYRNSLINPTYSSKG
          ++  + GKSPL +  VP  YP++ S   VYPG+  FP Y  G  LYGS HY      G+  PP     AWY PN    GMFP PY NS+I+P YSSKG
Subjt:  ISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHY------GNWFPPSFGPGAWYGPNFV--GMFPPPYRNSLINPTYSSKG

Query:  --LSGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA
          L   +AGNG    RR            NMSADAVPFQ+ +RA
Subjt:  --LSGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA

A0A6J1FS87 RNA-binding protein 1-like8.1e-8470.12Show/hide
Query:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN
        M   T ME   DQ +GRKIFVGGLSAELTEDDFK YFEKFGR+TDVVVM DS T RPRGFGFITFDS++SVDSVLQNNFHELNGRRVEVKRAIPKKGN N
Subjt:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN

Query:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL
        GG+IS       KSPL  S V P YPYY   YTVYPGF  FP YGPG  LYGS+ YGNWF PSFG    P AWY PNF GMFPPP++NSL+ PTYSS GL
Subjt:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL

Query:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA
        S  VAG   A  RRKV+    T  ++NMSADAVPF  KD+A
Subjt:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA

A0A6J1J2K5 RNA-binding protein 1-like2.3e-8671.78Show/hide
Query:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN
        M   TRME   DQ +GRKIFVGGLSAELTEDDFK YFEKFGR+TDVVVM DS T RPRGFGFITFDS++SVDSVLQNNFHELNGRRVEVKRAIPKKGN N
Subjt:  MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLN

Query:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL
        GG+IS       KSPL  S V P YPYY   YTVYPGF  FP YGPG  LYGS+ YGNWF PSFG    P AWYGPNF GMFPPP++NSL+ PTYSS GL
Subjt:  GGYISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG----PGAWYGPNFVGMFPPPYRNSLINPTYSSKGL

Query:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA
        S  VAG   A  RRKVE    T  ++NMSADAVPF  KDRA
Subjt:  SGTVAGNGIAHTRRKVEIKQATHGKRNMSADAVPFQIKDRA

SwissProt top hitse value%identityAlignment
Q8W034 Heterogeneous nuclear ribonucleoprotein 13.0e-2743.1Show/hide
Query:  STRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGY
        ++R    +  +K +KIFVGGL   LT+++F++YFE +G +TDV +M+D ATNRPRGFGF++FDS ++VDSVL   FH+L+G++VEVKRA+PK  N  GG 
Subjt:  STRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGY

Query:  ISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPG------FPHFPSYGPGVELYGSNHYGNWFPPSFGPGAWYG
            R+ GG            Y  YG   + Y G      F    S G G+  YGS+ YG  +  +   GA YG
Subjt:  ISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPG------FPHFPSYGPGVELYGSNHYGNWFPPSFGPGAWYG

Q920Q6 RNA-binding protein Musashi homolog 21.0e-1937.58Show/hide
Query:  SKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTRGGK
        ++ +KIFVGGLSA    +D K+YFE+FG++ D ++M D  TNR RGFGF+TF++ + V+ V + +FHE+N + VE K+A PK+     G  +  R RG  
Subjt:  SKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTRGGK

Query:  SPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG------PGAWYGP
                    PY    + +  G   +P++   V  YG  + G  F PS+G      P A YGP
Subjt:  SPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG------PGAWYGP

Q96DH6 RNA-binding protein Musashi homolog 21.0e-1937.58Show/hide
Query:  SKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTRGGK
        ++ +KIFVGGLSA    +D K+YFE+FG++ D ++M D  TNR RGFGF+TF++ + V+ V + +FHE+N + VE K+A PK+     G  +  R RG  
Subjt:  SKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTRGGK

Query:  SPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG------PGAWYGP
                    PY    + +  G   +P++   V  YG  + G  F PS+G      P A YGP
Subjt:  SPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFG------PGAWYGP

Q9C652 RNA-binding protein 15.5e-2940.93Show/hide
Query:  MENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKG-NLNGGYIS
        M +N   S+ +KIFVGGLS+  TE++FK YFE+FGR TDVVVMHD  TNRPRGFGF+T+DS +SV+ V+Q+NFHEL+ +RVEVKRAIPK+G   N G   
Subjt:  MENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKG-NLNGGYIS

Query:  NARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVE----LYGSNH--------YGNWFPPSFGPGAWYGPNF--VGMF-------PPPYRN
        N              +PP Y    S +   P  P    YG  ++    ++G +H        YG  F       +W  P     G +       PPP  N
Subjt:  NARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVE----LYGSNH--------YGNWFPPSFGPGAWYGPNF--VGMF-------PPPYRN

Query:  SLINPTYSSKGLSGT
               +   LSGT
Subjt:  SLINPTYSSKGLSGT

Q9VVE5 RNA-binding protein Musashi homolog Rbp61.8e-1942.18Show/hide
Query:  SKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTR-GG
        ++ +KIFVGGLSA  T +D K YFE+FG I D ++M D  TNR RGFGF+TF S + VD V + +FHE+N + VE K+A PK+  L       A+TR  G
Subjt:  SKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTR-GG

Query:  KSPLPN-----SIVPPPYPYYG-SVYTVYPGFPHFPSYG---PGVEL
        +S   N       +P  +P    + Y    G+  +PS+G   P V+L
Subjt:  KSPLPN-----SIVPPPYPYYG-SVYTVYPGFPHFPSYG---PGVEL

Arabidopsis top hitse value%identityAlignment
AT1G58470.1 RNA-binding protein 13.9e-3040.93Show/hide
Query:  MENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKG-NLNGGYIS
        M +N   S+ +KIFVGGLS+  TE++FK YFE+FGR TDVVVMHD  TNRPRGFGF+T+DS +SV+ V+Q+NFHEL+ +RVEVKRAIPK+G   N G   
Subjt:  MENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKG-NLNGGYIS

Query:  NARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVE----LYGSNH--------YGNWFPPSFGPGAWYGPNF--VGMF-------PPPYRN
        N              +PP Y    S +   P  P    YG  ++    ++G +H        YG  F       +W  P     G +       PPP  N
Subjt:  NARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVE----LYGSNH--------YGNWFPPSFGPGAWYGPNF--VGMF-------PPPYRN

Query:  SLINPTYSSKGLSGT
               +   LSGT
Subjt:  SLINPTYSSKGLSGT

AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-2843.1Show/hide
Query:  STRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGY
        ++R    +  +K +KIFVGGL   LT+++F++YFE +G +TDV +M+D ATNRPRGFGF++FDS ++VDSVL   FH+L+G++VEVKRA+PK  N  GG 
Subjt:  STRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGY

Query:  ISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPG------FPHFPSYGPGVELYGSNHYGNWFPPSFGPGAWYG
            R+ GG            Y  YG   + Y G      F    S G G+  YGS+ YG  +  +   GA YG
Subjt:  ISNARTRGGKSPLPNSIVPPPYPYYGSVYTVYPG------FPHFPSYGPGVELYGSNHYGNWFPPSFGPGAWYG

AT5G55550.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-2843.46Show/hide
Query:  RKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTRGGKSPL
        +KIFVGGL + +TE++FK YF++FG I DVVVM+D  T RPRGFGFITFDS ++VD VL   FHELNG+ VEVKRA+PK+ +     +SN R     SPL
Subjt:  RKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTRGGKSPL

Query:  PNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGS-NHYGNWFPPSFGPGAWYGPNFVGMFPPPYRNSL-INPTYSSKGLSGTVAGNGI
         + +       YG      P   +F ++ PG   Y S    G  F P  G G     N V  F     + L +N   S  G S T   N I
Subjt:  PNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGS-NHYGNWFPPSFGPGAWYGPNFVGMFPPPYRNSL-INPTYSSKGLSGTVAGNGI

AT5G55550.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-2843.46Show/hide
Query:  RKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTRGGKSPL
        +KIFVGGL + +TE++FK YF++FG I DVVVM+D  T RPRGFGFITFDS ++VD VL   FHELNG+ VEVKRA+PK+ +     +SN R     SPL
Subjt:  RKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTRGGKSPL

Query:  PNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGS-NHYGNWFPPSFGPGAWYGPNFVGMFPPPYRNSL-INPTYSSKGLSGTVAGNGI
         + +       YG      P   +F ++ PG   Y S    G  F P  G G     N V  F     + L +N   S  G S T   N I
Subjt:  PNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGS-NHYGNWFPPSFGPGAWYGPNFVGMFPPPYRNSL-INPTYSSKGLSGTVAGNGI

AT5G55550.3 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-2843.46Show/hide
Query:  RKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTRGGKSPL
        +KIFVGGL + +TE++FK YF++FG I DVVVM+D  T RPRGFGFITFDS ++VD VL   FHELNG+ VEVKRA+PK+ +     +SN R     SPL
Subjt:  RKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYISNARTRGGKSPL

Query:  PNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGS-NHYGNWFPPSFGPGAWYGPNFVGMFPPPYRNSL-INPTYSSKGLSGTVAGNGI
         + +       YG      P   +F ++ PG   Y S    G  F P  G G     N V  F     + L +N   S  G S T   N I
Subjt:  PNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGS-NHYGNWFPPSFGPGAWYGPNFVGMFPPPYRNSL-INPTYSSKGLSGTVAGNGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAGAGTACTAGGATGGAAAATAACAATGATCAGTCTAAGGGCAGAAAGATTTTTGTTGGGGGCTTATCAGCTGAATTGACTGAGGATGATTTCAAGAAG
TACTTTGAAAAGTTTGGTCGGATAACCGATGTAGTTGTGATGCATGATAGTGCAACGAACCGTCCTAGAGGATTTGGATTTATCACATTTGATTCTATTGAATCT
GTTGACTCTGTTCTGCAAAATAACTTTCATGAGTTGAATGGTAGGCGTGTGGAGGTGAAGAGAGCCATCCCAAAAAAGGGAAACTTGAATGGCGGGTATATTTCC
AATGCTAGAACACGAGGAGGAAAAAGCCCTCTTCCTAATAGCATTGTTCCTCCCCCTTATCCATACTATGGTTCTGTTTATACAGTTTATCCTGGTTTTCCACAT
TTTCCATCTTATGGACCGGGAGTTGAGTTGTATGGTTCAAACCACTATGGGAATTGGTTTCCCCCTAGCTTCGGTCCTGGTGCATGGTATGGCCCAAATTTTGTT
GGAATGTTTCCTCCACCTTATAGAAATTCTCTGATTAATCCAACATATTCAAGCAAGGGGCTCTCAGGTACAGTGGCTGGAAATGGAATTGCTCATACAAGAAGA
AAGGTGGAGATAAAGCAGGCCACTCATGGAAAGCGAAATATGTCAGCTGATGCAGTGCCATTTCAGATCAAAGATAGAGCTTTAGGGGATAACTTAACTTAA
mRNA sequenceShow/hide mRNA sequence
GTATAATCTCGCTGGTTTTGTTGAGTTGAGGCCCCATCATTAGGGCTTTAGGTGCAATTAGGGTTTTAGGACTCTTTTTAGGGCTAATTAGAATTCTTCTTCGAA
TCTGGAAGATGTTAAGACCATCTTTAATTTCATAGAATCTTATAGCACCGTCTCCAATTCTTTAGTAGTCGATAGTCGTTGCTGGGAATCAATTTGAGACACCCA
GAACTTTGTCTGTTTGGTTATTTGATTCACAGATGATAAGCCTTGTGCATTGGGAAAAAGTGAAAGTGAGAGAAGTCCTGCCGAGTTGAAAACCGTGGAGCGAGC
AACAGAACAAAGGATGGATAAGAGTACTAGGATGGAAAATAACAATGATCAGTCTAAGGGCAGAAAGATTTTTGTTGGGGGCTTATCAGCTGAATTGACTGAGGA
TGATTTCAAGAAGTACTTTGAAAAGTTTGGTCGGATAACCGATGTAGTTGTGATGCATGATAGTGCAACGAACCGTCCTAGAGGATTTGGATTTATCACATTTGA
TTCTATTGAATCTGTTGACTCTGTTCTGCAAAATAACTTTCATGAGTTGAATGGTAGGCGTGTGGAGGTGAAGAGAGCCATCCCAAAAAAGGGAAACTTGAATGG
CGGGTATATTTCCAATGCTAGAACACGAGGAGGAAAAAGCCCTCTTCCTAATAGCATTGTTCCTCCCCCTTATCCATACTATGGTTCTGTTTATACAGTTTATCC
TGGTTTTCCACATTTTCCATCTTATGGACCGGGAGTTGAGTTGTATGGTTCAAACCACTATGGGAATTGGTTTCCCCCTAGCTTCGGTCCTGGTGCATGGTATGG
CCCAAATTTTGTTGGAATGTTTCCTCCACCTTATAGAAATTCTCTGATTAATCCAACATATTCAAGCAAGGGGCTCTCAGGTACAGTGGCTGGAAATGGAATTGC
TCATACAAGAAGAAAGGTGGAGATAAAGCAGGCCACTCATGGAAAGCGAAATATGTCAGCTGATGCAGTGCCATTTCAGATCAAAGATAGAGCTTTAGGGGATAA
CTTAACTTAATCACTTAGACATTTTATTATTGGATTTGCACCTTGCATAAGGGCATTTGATTTGTAAATTCTATCCCCGATAGAATTAGATCCATGTCTCATTCT
TTCTATTATCCTCTTCAAACCTCTTCTAATAGTTTTTAGTTTTATTTCTAACTCTCTCTGGTGCTGACTCCACGATCCATTCGTAGAATTATAATCTCTGTAATA
TAACTGTTATTATGATTCAATCTTCTGCTGGGAATCCGAATTATCCGTCTTGTAAATGACTGGTACATGAATCTCTATAAAGGAGTCAGAGTTTAAAGTGTTGGG
TGCATTGCTTTTCACTACTTACTAAACAGGATACAGGATGCTCTATTTTGAAGTTTGCTTGTATGCCCATTGCTCTTGCCATAACCAGTGGCGTACTAATGCGGC
AATGCTCCGGAAGAATTCTATTGGGCCAAGAGAAGACCACTTGACCTTTTTCCTTAGAATTCTTGTTTCAACATGGGCTTGTGAAACACTGTGTAGGTGTTCTAT
TTGCATTGATACCATTTAAGATTTTTATCCTTTTTCAAAGGATATCATTACTATTATTATTTTAGGTGGTTACCGTG
Protein sequenceShow/hide protein sequence
MDKSTRMENNNDQSKGRKIFVGGLSAELTEDDFKKYFEKFGRITDVVVMHDSATNRPRGFGFITFDSIESVDSVLQNNFHELNGRRVEVKRAIPKKGNLNGGYIS
NARTRGGKSPLPNSIVPPPYPYYGSVYTVYPGFPHFPSYGPGVELYGSNHYGNWFPPSFGPGAWYGPNFVGMFPPPYRNSLINPTYSSKGLSGTVAGNGIAHTRR
KVEIKQATHGKRNMSADAVPFQIKDRALGDNLT