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Tan0001878 (gene) of Snake gourd v1 genome

Gene IDTan0001878
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Genome locationLG08:74407430..74411111
RNA-Seq ExpressionTan0001878
SyntenyTan0001878
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652742.1 hypothetical protein Csa_014245 [Cucumis sativus]3.3e-4993.27Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED
        MEHGSFTDE+KSTFS+ADEDHTLAN+LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAV D KLT PV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED

Query:  INIK
        INIK
Subjt:  INIK

KAG7036964.1 DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-4994.23Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED
        MEHGSFTDESKSTFSMADEDHTLANS+RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLM VCQHVRNT DKAV D KLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED

Query:  INIK
        INIK
Subjt:  INIK

XP_004147276.2 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus]3.3e-4993.27Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED
        MEHGSFTDE+KSTFS+ADEDHTLAN+LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAV D KLT PV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED

Query:  INIK
        INIK
Subjt:  INIK

XP_022948356.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita moschata]2.6e-4994.23Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED
        MEHGSFTDESKSTFSMADEDHTLANS+RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLM VCQHVRNT DKAV D KLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED

Query:  INIK
        INIK
Subjt:  INIK

XP_038893936.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]3.9e-5095.19Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED
        MEHGSFTDE+KSTFSMADEDHTLAN+LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAV D KLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED

Query:  INIK
        INIK
Subjt:  INIK

TrEMBL top hitse value%identityAlignment
A0A0A0LUT5 RNA_pol_L_2 domain-containing protein1.6e-4993.27Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED
        MEHGSFTDE+KSTFS+ADEDHTLAN+LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAV D KLT PV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED

Query:  INIK
        INIK
Subjt:  INIK

A0A0A0LV21 RNA_pol_L_2 domain-containing protein6.8e-4890.74Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVE-
        MEHGSFTDE+KSTFSMADEDHTLAN+LR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAV DF LTKP E 
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVE-

Query:  ---DINIK
           DINIK
Subjt:  ---DINIK

A0A6J1D9Q8 DNA-directed RNA polymerases I and III subunit RPAC22.1e-4993.27Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED
        MEHGSF+DESKSTFSMADEDHTLAN+LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKD+CQNLMVVCQHVRNTFDK+V DFKLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED

Query:  INIK
        INIK
Subjt:  INIK

A0A6J1G901 DNA-directed RNA polymerases I and III subunit RPAC21.2e-4994.23Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED
        MEHGSFTDESKSTFSMADEDHTLANS+RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLM VCQHVRNT DKAV D KLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED

Query:  INIK
        INIK
Subjt:  INIK

A0A6J1KDK3 DNA-directed RNA polymerases I and III subunit RPAC21.2e-4994.23Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED
        MEHGSFTDESKSTFSMADEDHTLANS+RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLM VCQHVRNT DKAV D KLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVED

Query:  INIK
        INIK
Subjt:  INIK

SwissProt top hitse value%identityAlignment
P0DPB6 DNA-directed RNA polymerases I and III subunit RPAC23.5e-1744.68Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVFDFK
        M   + TD    TF + +EDHTL NSLRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +     LM VCQHV + F+ ++ D+K
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVFDFK

P97304 DNA-directed RNA polymerases I and III subunit RPAC23.0e-1642.27Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTK
        M   + TD    TF + +EDHTL N LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +     L+ VCQHV   F+ ++ D+K  K
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTK

Q1RMG8 DNA-directed RNA polymerases I and III subunit RPAC21.3e-1643.62Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVFDFK
        M   + TD    TF + +EDHTL NSLRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +    +LM VCQHV + F+ ++ ++K
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVFDFK

Q5XK67 DNA-directed RNA polymerases I and III subunit RPAC23.2e-1848.89Show/hide
Query:  DESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTK
        +ES  TF + +EDHTL NSLRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E  +     L+ VCQHV NTF+ ++ ++K  K
Subjt:  DESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTK

Q6DRI4 DNA-directed RNA polymerases I and III subunit RPAC23.5e-1749.43Show/hide
Query:  DESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFK
        DE   TF + +EDHTL NSLRY + +   V FCGYSI HPS++++N R+QT  G PA E L++   NL  VC+HV  TF+  + +FK
Subjt:  DESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFK

Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit2.3e-3266.67Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFK
        MEHGSFT+ S ++F++++EDHTLAN++R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV ++K
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFK

AT2G29540.2 RNApolymerase 14 kDa subunit2.3e-3266.67Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFK
        MEHGSFT+ S ++F++++EDHTLAN++R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV ++K
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFK

AT2G29540.3 RNApolymerase 14 kDa subunit1.9e-1869.49Show/hide
Query:  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFK
        PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV ++K
Subjt:  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFK

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like5.2e-0830.49Show/hide
Query:  STFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDACQNLMVVCQHVRNTFDKAVFDF
        ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT   +  +    A  +L     +++N F+  V  F
Subjt:  STFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDACQNLMVVCQHVRNTFDKAVFDF

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like1.9e-0537.88Show/hide
Query:  STFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVV
        ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     DP     KD  +NL VV
Subjt:  STFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATGGGTCCTTCACGGATGAGAGCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATTCCCTCAGATACACGTTGAATCAAGATCCA
AGGGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATCAGGGTCCAAACAACAGGTGATCCAGCTAGGGAGGTTTTGAAAGATGCA
TGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACGTTTGACAAGGCTGTTTTTGATTTCAAACTCACCAAGCCTGTGGAAGACATTAATATCAAATAG
mRNA sequenceShow/hide mRNA sequence
CTTTTAAAATCAAATAAAATAAAAATGAATAAAAGAAGGAGAAAGCCCTAACTGCTCCCATGCCCCTTCTTCTTTTTGGCGCCCTCTCCTCCTCCGTTTTCGCAG
CTCGGTGTCGCCGTCGCCTCTCTCCCGTTCACTGCTGCCGTCGCCGCCGTCTTTCTTCCGTTCTGCCACCGCAGCCTCCCTCTTAGCAGCAATGGAACATGGGTC
CTTCACGGATGAGAGCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATTCCCTCAGATACACGTTGAATCAAGATCCAAGGGTGACATTCTG
TGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATCAGGGTCCAAACAACAGGTGATCCAGCTAGGGAGGTTTTGAAAGATGCATGTCAGAACTTGAT
GGTGGTGTGTCAGCATGTGAGGAACACGTTTGACAAGGCTGTTTTTGATTTCAAACTCACCAAGCCTGTGGAAGACATTAATATCAAATAGACATTAACAATTTT
TTTTTTTTTTCGTGTTCAACAATATTTTGGAGCGAGAGATTTGAAGCTTGACCACTCGACCAAGGAGACATGTCAATTACAACTATGTTCACTTTGGGAGACACT
AATATCATATAGAAATGAACTTTAAAATTAAGTATGAAAGTTTATTTTTGTTCCATCTATATTGTAGTTTACTGATTCCCCTCTGGATTTCTGGTTGAATGTAGA
TGGTAGGCTAAGAAGCATGGATACAGATACGAGACACGGATACGATACGACACGGACATGGCGACATGTCATTTCTTATAAATCTAGGACACGACACGGTTAGGA
CATGTTTATTAAATATACATTTTTAAAAATATATATCATTTTTTATATTAGAAAGAAA
Protein sequenceShow/hide protein sequence
MEHGSFTDESKSTFSMADEDHTLANSLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVFDFKLTKPVEDINIK